Pseudomonas amygdali: BKM19_003530
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Entry
BKM19_003530 CDS
T05354
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BKM19_003530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_003530
Enzymes [BR:
pamg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKM19_003530
DNA repair and recombination proteins [BR:
pamg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BKM19_003530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_C
PriA_3primeBD
DEAD
ResIII
Zn_ribbon_PriA
Helicase_C
DUF4796_N
HypA
AAA_30
Zn_ribbon_6
iSirtuin
RUBY_RBDX
AAA_16
PriA-like_WH
PIF1
TrwB_AAD_bind
DUF2428
Zeta_toxin
ADDB_N
Motif
Other DBs
NCBI-ProteinID:
AVB12783
UniProt:
A0AB35R4U7
LinkDB
All DBs
Position
complement(580726..582945)
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AA seq
739 aa
AA seq
DB search
MPDAILRLALPSPLRRLFDYRAPAGVSRSALQPGMRLRVPFGRREMIGILVEVVDHSGVP
ADKLKPAIALLDSEAPLPPALFKLCLWTSQYYQHSLGDTLSWALPVLLRQGELAESRQER
FWHVAPGASVGDPRIARAPKQREALTTLAQHPHGVAHQLLSKLMLNKDSLNLLLAKELVY
VEVRSHAPSARHEHWLAQPELPLNTEQRAAYEAIRAGFDSFHAFLLAGVTGSGKTEVYLQ
LIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALLHSAVNDRERLDAWLAARDGE
ADIIIGTRSALFTPMKNPGLIIIDEEHDGSYKQQEGLRYHARDLALVRARQENIPIVLGS
ATPSLESLHNAYTGRYGLLRLNQRAGGAQQPRFMRLDVKSRPLDSGISGPMQQAIGQTLA
AGQQVLVFLNRRGFAPTLLCHDCGWMSGCQRCDARMTVHQRSGELRCHHCGYVERVPRQC
PSCGKVDLRPVGAGTERAEERLAILFPDFPVLRVDRDSTSRKDAMNQLFATIQRGQPCIL
VGTQMLAKGHHFPRVTLVSILDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKVII
QTHLADHPLLIQLTEQGYFAFAEQALSERRSAGLPPFSHLALLRAEAHKPGQAEAFLDQA
CSDAEQLAAQMGLGGIELLGPVPAPMERRAGRYRAQLLVQSSARAPLHKLLATWLLALEQ
MPSGRQVRWSLDVDPVDLY
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgacgccatcctgcgccttgccctgccctcgccgcttcgccgcctgttcgactac
cgcgctcctgcgggcgtgtcgcgtagcgccttgcagcctggcatgcgtctgcgggtgcca
ttcgggcgacgggaaatgatcggcattctggtggaagtggtcgatcacagcggagtgcct
gccgacaagctcaaaccggccatcgccctgctcgacagcgaagcgccattgccgcccgcg
ctgttcaagctgtgcctgtggacctcgcagtattatcagcacagcctgggcgacacgctg
agctgggccttgccggtgttgctgcgtcagggcgaactggccgaaagtcgccaggaacgc
ttctggcacgttgcaccgggcgccagcgtcggcgacccgcgcatcgcgcgagcgcccaag
caacgcgaagcgctgaccaccctcgcccagcacccgcatggcgtggcgcatcagttgctg
agcaagctgatgcttaataaagacagcctcaacctgctgctggccaaggagctggtgtat
gtcgaggttcgcagccacgcacccagcgcacgccatgaacactggctggcccagcctgaa
ttgccgctcaacaccgagcaacgcgctgcctacgaagccatccgtgccgggttcgacagc
tttcatgcgtttttgctggctggcgtcactggcagtggcaagactgaagtctatctgcaa
ctgatccgcgaaacgcttgaggccggcaaacaggcgctggtgctgattccggaaatcaac
ctggggccacaaaccctggcgcgtttcgaacagcgcttcaatgcccgcatcgcgctgctg
cattcggcagtcaacgaccgcgaacgactggatgcctggctggcggctcgcgatggcgaa
gccgacattattatcggcacgcgctcggcactgttcacgccgatgaagaaccccggcctg
atcatcatcgacgaagaacacgacggctcctataaacagcaggaaggtctgcgctatcac
gcccgtgatctggccctggtgcgggcgcgtcaggaaaacattccgattgtcctgggctcg
gccaccccgtccctggaaagcctgcacaacgcctacaccggccgctacggcctgttacgc
ctgaaccagcgtgcaggcggtgcgcaacagccgcgtttcatgcgcctggacgtcaaaagc
aggccactggacagcggcatttccgggccgatgcagcaggctatcggccagacgcttgcg
gcaggtcagcaggtgctggtcttcctcaaccgtcgcggcttcgcacccaccttgttgtgc
cacgactgcggctggatgtctggctgccagcgctgtgatgcgcgcatgaccgtgcaccag
cgctcgggcgagctacgctgccatcactgcgggtatgtcgaacgtgtaccgcgccagtgt
ccgtcctgcggcaaggtggatttgcgcccggtaggcgcgggcaccgaacgtgccgaagag
cgcctggcgatcctgtttccggactttcccgtgctgcgcgtggatcgcgacagcacctcg
cgcaaggacgccatgaatcagttattcgcgaccatccagcgcggccagccctgcattctg
gtgggtacgcaaatgctcgccaaagggcatcacttcccacgggtaacgctggtgtcgatt
ctggatgccgacggcgggctgttttccggtgacttccgggccagcgagcgcatggcgcag
ttgatcgtgcaggttgcaggtcgtgccggccgcgcggaagagccgggcaaggtgatcatc
cagacccacctggccgaccatccactactgatccagctgaccgagcagggttatttcgcc
tttgccgaacaggccttgagcgagcgccgttcggctggcttgccgccgttttcacacctc
gcactgctgcgcgccgaagcgcacaagccgggacaggccgaggcctttctcgatcaagcc
tgcagtgacgccgagcaactggctgcgcaaatgggcctgggcggcatcgagctgctgggc
ccggttccggcaccgatggaacgccgcgccgggcgttatcgtgcgcaactgctggtgcag
tccagcgcacgcgcgccactgcacaaattgcttgccacttggttgctcgcgctggagcaa
atgcccagcggacgacaggtcagatggtcgctggatgtggacccggtggatctttattaa
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