Pseudomonas amygdali: BKM19_003875
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Entry
BKM19_003875 CDS
T05354
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKM19_003875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pamg03019
]
BKM19_003875
Enzymes [BR:
pamg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BKM19_003875
Messenger RNA biogenesis [BR:
pamg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKM19_003875
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AVB12847
UniProt:
A0AB35R057
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All DBs
Position
complement(653189..655066)
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AA seq
625 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLL
AHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKGK
DKGKEKPAAAAATGERPARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRDDEVD
NFGNRADYVSPYQGKGQNRGRRPAAAPGAAPAAGGAARPANSGRPAGGARNGSGTGAPKR
NGSGSSAPRSRDGQPRGRRPAREDQPLPREGQEPAVRAPRDGQPQPKIVHKESKIDRFPS
AEQLDQLPTRPRGEKPALLTRNRDS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tatacccagcctacccccgtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagaccggtactggtaaaaccggtggtttcgccctccctattctg
gagcggctgtttcccaatggtgttccggacaaatcccagcgtcacggcccgcgtcaacca
cgcgttctggtcctgaccccgacccgcgaactggccgcacaggtgcacgagagcttcaag
ctctatgcccgcgacctgaaattcgtcagcgcctgcatcttcggcggcgtcggcatgaac
cctcaggttcaggccatgtcccgtggcgtggacgtcctggtggcctgccccggccgcctg
ctcgacctggccggtcaaggcagtgtcgatttgtcccacgtcgaaatcctggtgctcgat
gaagcagaccggatgctcgacatgggcttcgtccatgacgtgaaaaaggtcctcgcgcgt
ctgccggccaagcgccagaacctgctgttctcggctaccttctccaatgacatcacgtct
ttggccggcaagctgctgcacaacccagagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgagcaacgggttttccgccttgccgccaaccacaagcgttcactgctg
gcgcacctgattaccgtcggtgcctgggaacaggtgctggtcttcacccgcaccaagcac
ggcgccaaccgtctggccgagtacctggacaagcacggccttgcggctgtcgcgatccac
ggcaacaagagccagaacgcccgtaccaaggcactggccgacttcaaggcaggtgatgta
cgcatcatggttgcgaccgatatcgccgcacgcggcctggatatcgaccagctgccgcat
gtcgtcaacttcgagctgccaaacgtcgacgaagactacgttcaccgtatcggtcgtacc
ggccgggccggtcgttcgggcgaagccatttccctggttgcgccggacgaagagaagctg
ctcaaaagcatcgagcgcatgactaaacagaagatcgccgatggcgacctgatgggcttc
gacatcaccgcagtcgaggctgaaaaaccggaagtgcgtgagcgtccggatgttcgcaac
tctcgtggtgcacgtcctgccggcgacaagaacaacggcggtcgtcgcgacaagggcaag
gacaaaggcaaggaaaaacctgccgctgcagccgccactggcgaacgccctgcaaggcag
ccacgcgaaaaaaaacctcgtgagggcacgcctcgcagcgaacagcgtgcatcgcagcca
tccataccgcgcccggcagccgatcgtgccccggacgagttccgcgacgacgaagtagac
aacttcggcaatcgtgctgactacgtcagtccttatcagggcaaaggccagaaccgtggt
cgtcgtcctgcagcagcacccggtgcagcaccggctgctggcggcgcagctcgcccagcc
aattcgggtcgacctgcgggcggcgctcgtaacggttccggtactggcgcgccaaagcgc
aacggttcgggttcgtcggctccgcgttctcgtgatggccagccgcgcggtcgtcgcccg
gcacgtgaagatcagcccttgccgcgtgaaggtcaggagccagccgtgcgtgccccgcgc
gacggtcagcctcagccgaagatcgtgcacaaggaatccaagatcgaccgtttcccgtct
gccgagcaactggaccagttgccaacacgcccacgcggtgaaaaaccggcgctgctgacc
cgcaatcgcgacagctga
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