Pseudomonas amygdali: BKM19_005095
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Entry
BKM19_005095 CDS
T05354
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BKM19_005095 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_005095 (recB)
Enzymes [BR:
pamg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BKM19_005095 (recB)
DNA repair and recombination proteins [BR:
pamg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BKM19_005095 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AVB13061
UniProt:
A0AB35R5A7
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All DBs
Position
935434..939126
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AA seq
1230 aa
AA seq
DB search
MNEHSLPLALRFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQIL
VVTFTDAATKELRDRIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIA
AQWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRRFCYPMSG
DALTWVRENLSGPAALLPRVRGLFGRDRSPLTQEPAELIEASLQERRAALAALKAPWAAW
AEELYALCQDAVARKVVDGRKMQERYFKPWFEKLAAWAADDTQETLDLGTGFTRLTPEGV
AEAWKSDPPSHPAFEAMAQLKAALDSLPKPDAAVLQHAAQWVSARFEEEKRRRAEMGFDD
MLLRLDAALHSAGGERLATLIREQFPVALIDEFQDTDPVQYRIFDSIYRLEGNDEQTGLF
LIGDPKQAIYAFRGADIYTYLRARQATDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRTQ
GRGAFLFRDDQGNQVPFSDALAQGRKETLEVDGAPLTALTVWHLESEQPVSGVIYRQQLA
ASCAREIVRLLNAGQHGRAGFAMLDKPLRGLRPADIAILVRDGKEAQAVRQQLSARGVRS
VYLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQDELAW
ERRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLLHLSELLQQAA
AELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFIC
SSKPVDGSRLPLQFHDADGNSQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWL
GVADLKRGNASNSMLHRSALGYLLGGGVALAESAELKVWLRDLAQGCDAIALQPVPEPTD
ERFSAPRNEAALVKLLVPKRRAAENWWIASYSALRIGDTVTTGADESPDSPQAQKLFDDE
RLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFALTAHTPELLRDAVARRC
SRRGWAGWINTLSDWLQQMLNMPLRLSPDATPVALGELNQPNQYRIEMEFWFASNNVNVA
QMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTFEHEGRYYVADYKSNWLGTDDTAYT
ELAMETAILDNRYDLQYVLYLLALHRQLKARMADYDYDQHMGGALYLFLRGSRSASQGAY
FVRPPRELIESLDLLFQGKPLAHDLPGALA
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacattcccttcctctggcactgcgttttccgctacgcggcagtcaactgatc
gaggccagcgctgggaccggcaagaccttcaccatctccgccctgtacttgcgcctggtg
cttgggcacggcaccgaacagtcaggctttggtcgtgaattgctgccgccgcagatcctc
gtggtgacctttaccgacgccgctaccaaggagctgcgtgacagaattcgtacccgattg
gcggaagctgcgcggttctttcgtgacgagattgccgcacctgacggtttgattgccgag
ctgcgcgagcagttcgaggccgagcagtggccggcctgtgccagccgtctggacatcgcc
gcacaatggatggacgaagccgccgtctcgacgatccacagctggtgccagcgcatgttg
cgcgaacacgcattcgacagcggcagcctgttcacccagaccctggaaaccgaccacagc
gatttgctcggtgaagtgctgcgcgactactggcgccgcttctgctaccccatgagcggc
gacgcgttgacttgggtgcgggaaaatctgagcggtccggcggcgttgttgccgcgtgtg
cgaggtttgtttggtcgtgatcgcagcccgctcactcaagagcccgccgaactgatcgag
gcgtcattgcaggagcgccgagcagcgctcgctgctctgaaagcaccttgggccgcctgg
gctgaagagctgtatgcgctctgtcaggacgccgtagcccgcaaagtggtcgatggccgc
aagatgcaggagcgctacttcaagccctggtttgaaaagcttgctgcatgggccgctgac
gacacacaggaaacgctggacctgggaaccggtttcactcgcctgaccccggaaggtgtt
gccgaagcctggaaaagtgatccgccttcacatcctgctttcgaggccatggcacagctg
aaagctgcgctggacagcctgcccaagccggatgccgcggtgttgcagcatgcggcgcag
tgggtaagcgcccgctttgaagaagagaagcggcgtcgcgccgagatggggtttgacgac
atgttgctcaggctcgatgccgccctgcacagcgctggcggcgaacgtctggccaccctg
attcgcgagcagtttccagtagcgttgatcgatgagtttcaggataccgacccggtgcag
taccggatcttcgacagcatctatcgccttgagggtaacgacgagcagaccgggctgttc
ctgatcggcgacccgaagcaggcgatctatgcgtttcgcggtgccgatatctatacgtac
ctgcgcgcccggcaggccaccgatggccgttggcacacgctggacaccaactaccgctcc
agccatgcaatggtcgcgtcggtcaaccatgtcttcacgcgcgcagagcaacgtacgcaa
ggtcgcggagcgttcctgtttcgtgatgatcaaggcaatcaggtgccgttctccgatgcg
ctggcccaagggcgcaaagagaccctggaagtcgacggcgcgccactgactgcactcacg
gtctggcatcttgaaagcgaacagccggtgtccggggttatttatcgccaacagttggcg
gccagttgcgccagagagatcgtgcgcctgctcaacgccggtcaacatggccgtgccggt
ttcgccatgcttgataaaccgctgcgcgggctgcgtccggccgacattgcgattctggtc
cgcgatggaaaggaagcgcaggcggtgcgtcagcaactcagcgcgcgtggcgtgcgcagt
gtttatctgtcggacaaggattcagtattcgccgctcaggaggcccacgaccttctgtcc
tggctcaaagcctgtgccgagcccgattcagaacgtacgctgcgtgccgcactggcatgt
atcacgcttgacctgccactggccgagttggagcgtctgaatcaggacgagctggcgtgg
gaacggcgcgtcatgcagttccgtggctatcgtgccgtgtggcgcagccagggcgtcctg
ccaatgctgcgccgcctgctgcacgacttcgccctgccgcagacattgatgacgcgcacc
gacggtgagcgagtactgaccaacctgttgcacttgtctgaactgctgcagcaggccgcc
gccgaactggacggcgaacaggcgctgattcggcatctgggcgaccacctggcactgtcc
ggtcaggctggcgaagaacagatcctgcgtctggaaagcgacgagcaactggtcaaggtg
gtgaccatccacaagtccaagggcctgcaatatccgctggtgttcctgccattcatttgc
tcctcgaaacccgtggacggcagtcgcctgccactgcagtttcatgacgccgacggcaac
tcgcagatcagcctgcaacccaccgaagcgctgattcagcaagccgatgacgaacgtctg
gccgaagacctgcgcttgctctacgtggcgctgacccgttccgaacacgcttgctggctg
ggcgttgccgacctcaaacgcggcaatgccagcaactcgatgctgcaccgttcggcgttg
ggttatttgctgggtggcggtgttgcgctggccgagtcggcagagctgaaagtctggctg
cgtgatctcgcgcaaggctgtgatgcgattgccttgcagcctgttcccgagcccactgac
gaacgcttcagtgcgccgcgcaacgaagccgcgctggtcaaactgctggtacccaaacgt
cgcgctgccgagaactggtggatcgcctcctacagcgccctgcgtatcggcgacaccgta
accaccggtgccgatgaatcgcctgacagcccgcaggcacagaagctgttcgacgacgag
cgcctggaccctgaagcgccgcgtgacattttgaccagcggcggcgatatccaccgcttt
ccgcgtggccccaatcccggcacctttctgcatggactgctcgaatgggctggcaacgaa
ggttttgcgctaacggcgcacacgcctgaactgctgagagacgccgttgcacgtcgctgc
agccgtcgcggctgggcgggctggatcaataccctgagcgattggctgcagcagatgctg
aacatgccgttgcgtctgtcaccggatgccacgccggtcgcgctgggtgagctgaatcag
cccaatcagtaccgcatagagatggagttctggttcgccagcaacaacgtcaatgtggcg
cagatggatgccctggtacgccgcttcacccacaacaacgcgccgcgtgctgcgaccgag
acggtctcgctcaacggcatgttcaaaggctttatcgacctgacgttcgaacacgaaggc
cgttattacgtggctgactacaagtccaattggctgggcaccgacgacactgcgtacacc
gaactggcgatggaaaccgccattctcgacaaccgttatgacctgcaatacgtcctgtac
ttgctggcgttgcatcgtcagctcaaggcacggatggccgactatgattacgaccagcac
atgggcggcgcgctgtatctgttcctgcgcggcagccgctcggcctctcaaggtgcgtat
tttgtccgtccgccacgcgaactgatagagagtctggaccttttgtttcagggtaaaccg
ttagcgcatgacctgccgggagcattggcatga
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