Pseudomonas amygdali: BKM19_005100
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Entry
BKM19_005100 CDS
T05354
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BKM19_005100 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_005100 (recD)
Enzymes [BR:
pamg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BKM19_005100 (recD)
DNA repair and recombination proteins [BR:
pamg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BKM19_005100 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
Helicase_RecD
SH3_13
AAA_22
Viral_helicase1
UvrD-helicase
AAA_17
SLFN-g3_helicase
AAA_16
T2SSE
nSTAND3
TraI_hel_assoc_N
AAA_28
PhoH
DEAD
AAA_5
NTPase_1
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AVB13062
UniProt:
A0AB35R344
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All DBs
Position
939123..941216
Genome browser
AA seq
697 aa
AA seq
DB search
MSRSFDDLLPTALDDISLAELSPLTRVGDLLILLERWVERGWLRALDKAFVAFLSDLDPQ
ADPLVLVAAALTSHQLGHGHVCLDLYETLKEPDFALSLPPEGDQQGGTMLLPSQLLAALD
GAAWCQALAGSMLVAEVGDSSAEALQKPLVLAERRLYLRRYWTYERRIAAALRQRLAQSE
TPPEDLPQRLNALFGPANSAPQAIIDWQKLACALATRKGFSIITGGPGTGKTTTVVRLLA
LLQAPAVQSGQPLRIRLAAPTGKAAARLTESISQQVQSLDVSDDVRQKIPSEVTTVHRLL
GSRPGTRHFRHHAGNLLPLDVLVVDEASMIDLEMMANLLDALPVHARMVLLGDKDQLASV
EAGAVLGDLCRDAEEGFYSPDTQAWLEAVSGEDLGKGGLRQGDAQQHPLAQQVVMLRHSR
RFGQGSGIGQLARLVNQQQDQQARALLAAGSHDDLFALALKGEQDLKFERLVLDGLGRGE
QGPQGYRHYLNVLAAERPADDSALDDACWTRWARSVLSAFDAFQLLCAVRKGPWGVEGLN
QRITHALFNAKLIESEQQWYEGRPVLMTHNDYGLGLMNGDIGITLRLPERDGDGKQVLRV
AFPRNDGSDGVRFVLPSRLNEVETVYAMTVHKSQGSEFAHTALILPEALNPVLTKELIYT
GITRAKHWFSLIEPRQGIFEEALRRKVKRLSGLMLGL
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctcgttcgacgatctgttgcccaccgcgctggacgacatcagcctcgctgaa
ttgagtccgctgacgcgcgtcggcgatctgttgatcctgctggagcgctgggtcgagcgc
ggctggttgcgtgcgctggacaaagcatttgtcgcgtttctcagcgacctcgatccgcag
gccgatccgctggtgctggtcgctgcggcgctgaccagtcatcaactcggccacggccat
gtttgccttgatctgtacgaaaccctgaaagaaccggacttcgccttgtcattgccaccc
gagggcgatcagcaaggcgggacaatgctgctgccctcacaactgttggccgcgctggat
ggcgccgcgtggtgccaggcgcttgcaggcagcatgctggtggccgaagtaggagactca
agtgccgaggcgttgcaaaaaccattggtgctggccgagcggcgtctttacctgcgccgc
tactggacctatgaacggcgtatcgccgcagccttgcgtcagcgcctggcgcagagcgaa
acgccgccggaggatctgccgcagcgcctgaatgccctgttcgggcctgcgaactcagcg
cctcaagccattatcgactggcagaaacttgcctgcgcgctggcgacccgcaagggcttc
agcatcattaccggcggccctggcaccggcaagaccacaaccgtggtgcgcttgctggcg
ttattgcaggccccggcggtgcagagtggccagccgttgcgcatccgtctggcggcacct
accggcaaggcggcggcccggctgaccgagtccatcagccagcaagtgcagagcctggat
gtcagcgacgacgtacggcagaaaatccccagcgaagtcaccaccgtccaccgcctgctg
ggcagccgccccggcacccggcatttccgtcaccatgcgggcaatttactgccgctggat
gtgctggtggttgatgaggcgtcaatgattgacctggaaatgatggccaatctgctcgac
gcactgcctgtgcatgcacgcatggttctgctgggcgacaaggaccagctggcctccgtt
gaggcgggggcggtactcggggatttgtgccgcgacgccgaagaaggtttctacagcccc
gacacccaggcctggctggaagccgtcagcggcgaagacctcggcaagggcggtttgcgc
cagggcgatgcgcagcagcatccgttggcccagcaagtggtgatgctgcgccactcgcgt
cgttttggccaaggcagcggtatcggtcagttggcccgactggtcaaccagcagcaggac
caacaggcccgcgcgctgcttgcggcgggcagtcacgacgacctgttcgccctggccctc
aagggcgaacaggacctcaagttcgaacgcctggtcctcgacggtcttggcaggggcgag
caaggtccgcagggttaccggcattacctgaacgtactcgccgccgagcggcccgccgac
gattcggcactggacgacgcgtgctggacccgttgggcgcgctcggtactcagcgccttc
gacgcctttcaactgctgtgcgctgtacgcaaaggcccgtggggcgtggaaggcttgaac
cagcgcattactcatgcgctgttcaacgcaaagctgatcgaaagcgaacagcaatggtac
gaaggccgcccggtgttgatgacccacaacgactatggcctgggcttgatgaacggcgac
attggcatcaccttgcgcctgcccgagcgcgacggcgacggcaagcaagtgctacgtgtc
gcgttcccgcgcaacgacggcagcgatggcgtgcgcttcgtcctgcccagccgcctcaac
gaggtcgaaaccgtgtacgccatgaccgtacacaaatcccaaggctcggaattcgcccac
accgccctgatcctgcccgaagcgctcaacccggtactgactaaggagctcatctacacc
ggcatcacccgcgccaagcactggttcagcctgatcgaaccgcgccagggcatcttcgaa
gaagccctgcgccgcaaggtcaaacgtctgagtgggctgatgttggggctttga
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