Pseudomonas amygdali: BKM19_005345
Help
Entry
BKM19_005345 CDS
T05354
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
pamg
Pseudomonas amygdali
Pathway
pamg02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BKM19_005345
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
pamg02022
]
BKM19_005345
02035 Bacterial motility proteins [BR:
pamg02035
]
BKM19_005345
Two-component system [BR:
pamg02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
BKM19_005345
Bacterial motility proteins [BR:
pamg02035
]
Pilus system
Twitching motility proteins
BKM19_005345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
HTH_8
Mg_chelatase
HTH_50
HTH_30
AAA_5
AAA_22
Pre_tape_measure
AAA_16
AAA
Motif
Other DBs
NCBI-ProteinID:
AVB13104
UniProt:
A0AB35R7A3
LinkDB
All DBs
Position
complement(985719..987056)
Genome browser
AA seq
445 aa
AA seq
DB search
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPD
GNGLELVQHIQHGYPHVPVAMITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSAL
SLPCAQPARSIDSRLLGDSLAMRTLRNQIGKLARSQAPIYISGESGSGKELVARLIHEQG
PRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGSQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIE
VRVPSLRERREDIDQLAASVLKRLAGNGTQPVARLNAQALETLKSYRFPGNVRELENMLE
RAYTLCENDEIHASDLRLAESASPQEHSGPSLADIDNLEDYLESIERKLILQALEETRWN
RTAAAERLSLSFRSLRYRLKKLGLD
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgagccaacggcaaaaaatcctgatagtcgatgacgagccggatatccgcgaactgctg
gagatcactctggggcgcatgaaactcgacacccgatgcgcccgcaatgttgccgaggcc
cacgactggctggcccgcgagccgttcgatatgtgcctgaccgacatgcgtctgcccgac
ggcaatggccttgagctggtgcagcatatccagcacggctaccctcatgtgccggtggcg
atgatcactgcccacggcaacctggacaccgcgattaatgcgctcaaggccggggctttc
gattttgtgaccaagccggtcgacctcggcaggctgcgcgaactggtcaatagtgcgctg
agcctgccttgcgcccagccagcccgcagcatcgacagccgcctgctgggcgactcgctg
gcgatgcgtaccttgcgcaaccagatcggcaagctggcccgcagccaggcgccgatctac
atcagcggcgaatcgggcagcggcaaggagcttgtagcgcggctgatccacgagcagggt
ccgcgcatcgataaaccgttcataccggtgaattgcggggccattccttccgagctgatg
gagagtgaattctttggccatcgcaagggcagtttcagcggtgcccacgaagacaagcct
ggtctgtttcaggcggcacataccggaacgctgtttctcgacgaagtggccgacctgccg
ctggccatgcaggtaaaactgttgcgagccatccaggaaaaatcaatccgcagtgtaggc
agccagcaagagcagattgtggacgtacgcattctgtgcgccacgcacaagaaccttaat
gcagaggttgcggcaggccgtttccgtcaggatctgtattaccggttgaacgtgatcgaa
gtgcgcgtcccctcattgcgcgagcggcgcgaggacatcgatcaactggcagccagtgtt
ctaaagcgacttgctggcaatggcacgcaaccggtggcgcgcctgaatgcgcaggcgctg
gagacgctgaagagctaccgattccccggtaacgtgcgcgaactggaaaacatgctggag
cgcgcctacacgctctgtgaaaacgatgaaatccatgccagcgacctgcgccttgcagag
tccgccagcccccaggagcacagcggtcctagcctggccgacatcgacaaccttgaagac
tacctcgaaagcatcgagcgcaagctgattctgcaggccctggaagaaacccgctggaac
cgtaccgcagcggcagaaaggctcagcttgtccttcagatcgctgcgttaccggctgaag
aaactgggcctggattga
DBGET
integrated database retrieval system
