Pseudomonas amygdali: BKM19_007510
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Entry
BKM19_007510 CDS
T05354
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
pamg
Pseudomonas amygdali
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_007510
Enzymes [BR:
pamg01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
BKM19_007510
DNA repair and recombination proteins [BR:
pamg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
BKM19_007510
Prokaryotic type
BKM19_007510
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
CAP59_mtransfer
DUF3243
Motif
Other DBs
NCBI-ProteinID:
AVB13467
UniProt:
A0AB35R0R4
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Position
complement(1412371..1413819)
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AA seq
482 aa
AA seq
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MQLIWLRSDLRVHDNTALTAAMERGPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVELEK
ALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKAMEKA
GVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLSIK
SDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQLS
AYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRHRA
FRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLL
IDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLFIK
RWLPELADLNKKQIHDPASIGGLFGAADYPKPIVDLSKSRARALAAFKALPARQPAAGIE
HD
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgatctggctgcgtagcgacctgcgcgttcacgataatactgccctgaccgct
gccatggagcgcggtccgacgctggcggtttacctgctcagcccggcacagtggcgcagc
cacgacgacgctgactgcaaggtggatttctggctgcgcaatctggtcgagctggaaaag
gcgctgggcgcgctgaacgtaccgctgttgattcgcgaagccgatacctgggatcaggca
cctgaagtgctgtcgacactgtgcacgcagttcaaggtcgaaggccttcacctcaatcag
gaatacggcatcaacgaaacacgccgtgatcaggcggtgcaaaaggcgatggaaaaagcc
ggtgtgcaggtcaccagctaccttgatcaactgttgttcaagccgggcagcatactgacc
aagaccggcaattatttccaggtgttcacccagttcaagaaagtctgctacaaccggatg
caccaggccatgccgcagccggtgcgcacacccaaagcgcagcaatcactgtcgatcaag
agcgattcgatccctgatcaggtcgagggctttgccacgccctcgaaagcattacgtgac
ctttggcctgcaggcgaggctgaagccaggcggcgcatggcgaccttcgccgacgcgcaa
atcagttactacaagaccgaacgcgactttcccgccaaacccggcaccagtcagctgtca
gcgtatctggcggcaggggtgatttcgccgcgccagtgcctgcatgcggcgctgggcagc
aaccagggggaattcgagactggcgacgttggcactgtgacctggatcaacgagctatta
tggcgagagttttataaacacaccctggtcggctaccctcgtgtatcacggcatcgtgcc
ttccgcccggaaaccgaggcgttgaagtggcgcgatgcccccgaagaactgctggcgtgg
caagaggcgcgtaccggtctgccgattattgacgcagcgatgcgccagttgctggaaacc
ggatggatgcacaatcggctaaggatggtcgttgcgatgttcctcaccaaaaacctgttg
atcgactggcgcgagggcgagcggtttttcatgcgccacctgatcgacggcgacctggct
gccaacaacggcggctggcagtggagctcgtccaccggcacagactcggcgccctacttc
cgtattttcaaccctttgtcgcagtcggaacgcttcgacccagaaggcctgttcatcaaa
cgctggctgccggaactggcggatctgaataaaaagcagattcatgaccccgcgtccatc
ggcggcctgtttggcgctgccgactacccgaaacctatcgtcgatctgagcaaaagccgc
gcccgcgccctggcagcgttcaaagcgcttccggcccgccaacccgctgcgggaatcgaa
catgactga
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