Pseudomonas amygdali: BKM19_008215
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Entry
BKM19_008215 CDS
T05354
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
pamg
Pseudomonas amygdali
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pamg03032
]
BKM19_008215
03036 Chromosome and associated proteins [BR:
pamg03036
]
BKM19_008215
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_008215
DNA replication proteins [BR:
pamg03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
BKM19_008215
Chromosome and associated proteins [BR:
pamg03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
BKM19_008215
DNA repair and recombination proteins [BR:
pamg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
BKM19_008215
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
SSPI
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AVB13592
LinkDB
All DBs
Position
1549184..1549465
Genome browser
AA seq
93 aa
AA seq
DB search
MALTKDQLIADIAEAIDAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERPAR
TGRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atggctcttactaaagaccaattgatcgccgatatcgctgaagctatcgacgcgccaaaa
actaccgcgcgtaatgctcttgagcaattgggccaaattgttgccgaccaattggaaaac
ggcgtggaaatcactttgccaggtatcggcaaactgaaagttgcagagcgtccggctcgc
actggccgcaacccttcgactggcgctgccatcgaaatcgctgccaagaaagttatcaag
ttcgtaccagccaaagtgctgaccgactcgatcaacaagtaa
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