Pseudomonas amygdali: BKM19_009215
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Entry
BKM19_009215 CDS
T05354
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
BKM19_009215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_009215
Enzymes [BR:
pamg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
BKM19_009215
DNA repair and recombination proteins [BR:
pamg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
BKM19_009215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
DUF4807
Motif
Other DBs
NCBI-ProteinID:
AVB17369
LinkDB
All DBs
Position
complement(1756621..1758012)
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AA seq
463 aa
AA seq
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MMPDMIKDPFARLGLDREVLTVSQLNGRARVLLEDVFSSIWVEGEISNLSRPASGHVYFT
LKDSGAQVRCALFRQSAARVRQALKDGLQVKVRGKVSLFEGRGDYQLILDTVEPAGDGAL
RLAFDALKAKLSDEGLFSAERKVALPLHPQRIGIISSPTGAVIRDIISVFRRRAPRVELT
LIPTAVQGREAINQIVRALKLADSRGFDALILARGGGSLEDLWCFNEEAVARAIDACVTP
IVSAVGHETDVSISDFVADVRAPTPSAAAELLAADSSDLHRRVDSLHRRLVSRMQDRLMR
ERLRLEGISRRLRHPGERLRQQSQRLDDLDMRLRRAFEQNMHQRQVRLAHMQSRLAAQHP
GRTLGFLRQRLDALAERLPRAIREQIKARKLQLQSQVQTLNVVSPLATLGRGYSILLDER
GHAIRSAAQTQTGQRLTARLGEGELQVRVEDNHLTPVTLSLLD
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgatgcccgacatgatcaaagaccctttcgcaagactcggcctcgaccgggaagtcctt
actgtcagccagctcaacggccgtgcgcgggtgttgctggaggacgtgttcagcagtatc
tgggtcgaaggcgagatatccaacctctctcgcccggcgtctggccatgtgtacttcacg
ctgaaggactctggcgcgcaagtgcgttgcgcactgttccggcagagcgcggcgcgtgtg
cgtcaggcgctcaaggacggcttgcaggtcaaggtgcgcggcaaggtgtcgctgtttgaa
ggccgtggcgactaccagctgattctcgacaccgtcgaacccgccggtgatggcgctttg
cgcttggcattcgatgcgctgaaagccaagctcagcgacgaaggcctgttcagcgccgag
cgcaaggttgccttgccgttgcatccgcaacgtatcggcatcatcagctcaccgaccggc
gcggtaatccgcgacatcattagtgtgttccgccgccgcgcaccgagggtcgaactgaca
ttgatccccactgccgttcaggggcgtgaggcgatcaaccagattgtccgcgcactgaaa
ctggccgacagcagaggcttcgatgcactgatactcgcccgtggtggtggatcgctggag
gacctgtggtgcttcaacgaagaagctgtcgcccgcgccatcgacgcgtgcgtgacgccg
attgtcagtgctgttggacatgaaaccgatgtttccatcagcgatttcgtggccgacgta
cgagcgccgacgccctccgctgccgccgaactgctcgctgcggactccagtgacctgcat
cgacgcgtcgacagcctgcaccgccgactggtgagccgtatgcaggatcgactgatgcgc
gagcgcttgcgtcttgagggcatttcgcggcgtctgcgtcatcctggcgagcgcttgcgt
cagcagtcgcaacggctggacgacctggacatgcgcctgcgccgcgctttcgaacagaac
atgcaccaacgtcaggtgcgtctcgcccatatgcagagccgtctagctgcacagcatccg
ggccgaaccctgggttttctgcgtcagcgtctggatgccttggccgagcgtctgccgcga
gccattcgtgaacagatcaaggcacgcaagctgcaactgcaaagtcaggtgcagaccctc
aacgtggtcagcccgctcgccacactgggacgcggttacagcatcctgctcgacgagcgc
ggccacgcgatccgcagcgcggcacagacgcaaacgggccaacggcttaccgccaggctc
ggcgaaggcgaactgcaagtgcgcgttgaagacaatcacctcacacccgtgaccctctcc
cttctggactga
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