Pseudomonas amygdali: BKM19_010925
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Entry
BKM19_010925 CDS
T05354
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pamg
Pseudomonas amygdali
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pamg03000
]
BKM19_010925
Transcription factors [BR:
pamg03000
]
Prokaryotic type
Helix-turn-helix
Other families
BKM19_010925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
HTH_30
HTH_7
AAA_5
HTH_23
nSTAND6
Mg_chelatase
AAA_2
HTH_11
HTH_20
HTH_3
HTH_22
HTH_10
HTH_17
AAA
HTH_24
dnstrm_HI1420
DUF2089
Xre-like-HTH
HTH_29
PAS_7
HTH_AsnC-type
Phage_CP76
AAA_7
HTH_28
nSTAND3
HTH_36
RWP-RK
HTH_psq
AAA_16
TetR_N
MerR
RsmI_C
HTH_Tnp_1
Motif
Other DBs
NCBI-ProteinID:
AVB14051
UniProt:
A0AB35QU20
LinkDB
All DBs
Position
complement(2108001..2109854)
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AA seq
617 aa
AA seq
DB search
MSQSSASLVHDIIIQDSWRRCRDFGLSHQTRPSFGQLPNAEVSRLLERHHGLVQTTHQEV
LPVYENILSNSNCLILLADPQGQLLKSWGAQRFVESSQAQGFMAGASWSERGTGTNAIGT
ALACEQAIHIEPDEHFLKANRFMTGSASPIFDTDRRIIAVLDVSSDSFLPPSHTLGMVKM
MSQSVENRLILDQFRDSHYQLIFNTGLNNLDSQWAGLLIFDESGQILCANRRADNLLGTT
PSGASIETLFRCPILQLLSETEARPFALHAFGNNRFQCLLKRPTRKPLKLHSVQPAQAPV
APRSLDLEAISLGDAKIEKAVNQAQRLLEKDIPLLIHGETGVGKEVFVKALHQASTRATQ
PLIAVNCAAIPAELVEAELFGYERGAFTGASQKGSIGLIRKADKGTLFLDEVGDMPLPVQ
ARLLRVLQERCVQPLGSSELYPVDIRLISATNRSLRDQVQTGHFRQDLYYRISGLNIELP
PLRERTDKHALIQRIWERHRDAHQRAGFSREVLELFEHHPWPGNIRQLNSVIQVALALAD
EQPISTEHLPEDFLLDMGMDEDCREPVKTEESTVRLHTTEDLSQLFQAAGGNISQLAKRL
GVSRNTLYKRLREQRIV
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaatccagcgcttcgctcgttcacgacatcatcattcaggattcatggaggcgc
tgccgggatttcggtctcagccatcagacgcgcccttcattcggccaactgccgaacgct
gaggtttccaggctgctggagcgccatcacgggctggtgcagaccacccatcaggaagtc
ctgccggtttatgaaaacattctgagcaactccaattgcctgattctgctggccgaccct
caaggccagttgctcaaatcctggggcgcgcaacgcttcgtcgagtcttctcaggcacag
ggcttcatggctggcgccagctggagcgaacggggcaccggcaccaatgccatcggcaca
gcactggcctgtgagcaggccattcacattgaaccggacgagcacttcctcaaggcgaat
cgcttcatgaccggttcagcttcaccgatcttcgataccgatcggcggatcattgccgtg
ctggatgtatccagtgacagtttcctgcccccctcgcataccctgggtatggtcaagatg
atgagccagtcggtggaaaaccgactgatcctcgatcagttccgcgactcccactatcag
ttgatattcaatacgggcctgaacaatctcgacagccaatgggcaggcctgctgattttt
gacgaaagcggccagatcctttgcgccaatcgacgcgctgacaatttgttggggacgacg
ccgtccggtgccagtattgaaacgttgttcagatgcccgatcctgcaactgctcagcgag
acagaagcgcggccgtttgcgctgcacgcgtttggcaacaatcgctttcaatgtctgctc
aagcgtccgacccgcaagccgctgaagctgcacagcgtccaaccggctcaggcacctgtc
gcgccgcggagcctggatctggaggcgatcagcctgggtgatgcaaaaatcgagaaagcc
gtgaatcaggcgcagcggctgctggaaaaagacatcccgctgctgatccacggggaaacc
ggggtcggcaaggaagtgtttgtcaaagccctgcatcaagccagtacccgcgccactcag
ccgctgatcgctgtcaactgcgcggcgatcccggccgaactggtcgaggccgagctattt
ggctatgaaaggggggcgttcaccggtgccagtcaaaaaggcagtattggcctgattcgc
aaagccgacaaaggcacgctgtttctggatgaagtcggtgacatgcccctgccggtacag
gcgcgattgctgcgtgtgctgcaagaacgctgcgttcagccgttgggcagcagtgaatta
tatccggtagacatacgcctgatttcagccaccaatcgcagcctgcgcgatcaggttcag
acggggcactttcgccaggacctttattatcgaatcagtgggctcaacatcgagttgccg
ccgttgcgcgagcgcaccgacaaacatgcactcatccagcgtatctgggagcggcatcgc
gacgctcatcaacgggcagggttttccagagaggttctcgagctattcgaacatcacccg
tggccgggcaacattcgtcagctcaacagcgtgattcaggtggcgcttgctttggcagat
gaacagccgatcagtaccgagcacctgccggaggattttctgctggatatgggcatggat
gaggactgccgagagccggtgaaaactgaggaatccactgtgcgccttcacacgacagaa
gacctgagccaactgtttcaagcggctggcggaaatatttcacagctggcaaaacgtttg
ggggtaagccgcaacacgctatacaagcggttgcgggaacagcggattgtctag
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