Pseudomonas amygdali: BKM19_012415
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Entry
BKM19_012415 CDS
T05354
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BKM19_012415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_012415
DNA repair and recombination proteins [BR:
pamg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BKM19_012415
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BKM19_012415
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_30
HAMP
Cauli_AT
Motif
Other DBs
NCBI-ProteinID:
AVB14305
UniProt:
A0AB35QUW0
LinkDB
All DBs
Position
2467926..2469941
Genome browser
AA seq
671 aa
AA seq
DB search
MSEFQLVTRFEPAGDQPEAIRQLVEGIDAGLAHQTLLGVTGSGKTFSIANVISQVKRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLRMVMHIDRGDKLDQRALLRRLADLQY
TRNDMDFARATFRVRGDVIDIYPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLIEAMEGIKVELQERLEYLRTQNKLVEAQRLEQRTRFDLEMMLELG
YCNGIENYSRYLSGRPSGAPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHAGRVVEQVVRPTGLVDPQ
IEIRPALTQVDDLLSEIHKRTALEERVLVTTLTKRMSEDLTDYLSDHGVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA
ARNLNGRAILYADRITGSMERAIGETERRRDKQLAFNLEHGITPKGVFKDVADIMEGATV
PGSRSKKRKGMAKAAEENARYENELRSPSEINKRIRQLEEKMYQLARDLEFEAAAQMRDE
IGKLRERLLAV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagttccagctcgttacccgttttgagccagccggcgatcagcccgaggccatt
cgccaactggtcgaagggatcgacgcagggctcgcgcaccagaccttgctgggggtgacc
ggctcgggcaagacgttcagcatcgccaacgtgatctctcaggtgaagcgcccgacgctg
gtcctggcaccgaacaagaccctggccgcgcagttgtatggcgaattcaaggcgttcttc
ccgaacaacgctgtggaatatttcgtttcctattacgactactaccagcccgaggcctat
gtgccgtcgtctgacaccttcatcgagaaagatgcgtcgatcaacgaccacatcgagcag
atgcgcctgtctgcaaccaaggcgctgctggagcgtaaggacgcgatcatcgtcaccacg
gtgtcgtgcatctacggcctgggcagcccggaaacctatctgcgcatggtcatgcacatc
gaccgtggcgacaaactggaccagcgcgccctgttgcgacgactggccgacctgcaatac
acccgcaacgatatggacttcgcccgtgcgacgttcagggtgcgtggcgatgtcatcgac
atctacccggccgaatccgatctggaagcgatccgcgtcgagctgttcgatgatgaggtc
gaaagcctgtcggcgttcgatccgctgaccggtgaggtgatccgcaagctgccgcgcttc
acgttctaccccaagagccattacgttaccccgcgcgagaccctgatagaggcaatggaa
gggatcaaggtcgagttgcaggagcgtcttgaatacctgcgcactcagaacaagctcgtt
gaagcccagcgtctggagcaacggacccgcttcgatttggagatgatgctggaactgggc
tactgcaacggtatcgaaaactactcgcgctacctgtcgggccgtccgtccggtgcgccg
cctccgaccctgttcgactacctgcctgccgatgccttgctggtgatcgacgagtctcac
gtcagcgtgccgcaggtcggcgcgatgtacaaaggcgaccgctcacgcaaggaaaccctg
gttgagtacgggtttcgtttgccatcggcgctggataaccggcccatgcgctttgacgag
tgggaagcgatcagcccgcagaccatttttgtctcggcgacgccgggcaactatgaagcg
gaacacgcgggacgtgtcgtcgagcaggtagtacgcccgactggtctggtggacccacag
atcgagattcgcccggcgctgacccaggtcgacgacctgttgtcggaaatccacaaacgt
acggcgctggaagagcgggtgctggtcaccacgctgaccaagcgcatgtcagaggatttg
accgattacctcagcgaccacggggtgcgagtgcgttacctgcactcggacatcgataca
gttgaacgtgtcgagatcatccgcgacctgcgtctgggtaccttcgatgtgttggtgggg
atcaacctgctgcgcgagggcctggacatgccggaagtgtcgctggttgcgattctcgat
gccgacaaggaaggtttcctgcgttccgaccgttcgctgattcagaccatcggtcgggct
gcgcgtaacctcaatggccgggcgatcctgtacgccgatcgcatcactggttccatggag
cgcgccattggcgaaaccgaacggcgccgcgataaacagctcgcctttaaccttgagcac
ggcattaccccaaaaggcgtgttcaaggacgttgcagacatcatggaaggtgccacggta
cccggctcgcgcagcaagaagcgcaagggcatggccaaggccgccgaagaaaacgctcgc
tacgaaaacgaactgcgctcgccgagcgagatcaacaagcgcattcgtcaactggaagaa
aaaatgtaccagttggcccgcgacctggagttcgaagccgcagcgcagatgcgcgacgag
atcggcaagttgcgggagcggttgctggcggtttga
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integrated database retrieval system
