Pseudomonas amygdali: BKM19_016170
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Entry
BKM19_016170 CDS
T05354
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pamg
Pseudomonas amygdali
Pathway
pamg02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BKM19_016170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pamg03021
]
BKM19_016170
Transcription machinery [BR:
pamg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BKM19_016170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
HTH_28
GerE
HTH_65
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AVB14942
UniProt:
A0A0N0XEY4
LinkDB
All DBs
Position
3285422..3285967
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AA seq
181 aa
AA seq
DB search
MTCSSAPDQTRIDDLYAQHSGWLRQWLTRRFGNSFNTADVADLTHDTFLRLLLKPRVFRL
PGEARSFLCTVARGLCIDQWRRGQIEQAWLTELANRPENLHPSPEYVAILLETLHEIDAM
LRDLPHKARTAFLLAQLSGNTYREIAEQIGTSERMVKKYMAQVMYQCMVRELSARADECR
P
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgacctgctcaagcgctcctgatcagacccgcatcgacgacctttatgcacagcactcc
ggctggctacgtcagtggctgacccggcgctttggcaactcgttcaacactgccgacgta
gcggacctgactcacgataccttcctgcgcctgttgctcaagcctcgagtattcaggctg
cccggtgaagcgcggtcgttcctatgtaccgttgcacgcggcctgtgcatagatcaatgg
cgtcgtgggcagatagagcaggcatggctgacagagctggcaaaccgccccgagaacctg
cacccctcccccgagtacgttgccattcttctcgagacactgcatgaaatcgacgccatg
ctgcgtgacttgccgcacaaggcgcgaaccgcctttttgctggcgcaactgtcaggcaac
acttaccgcgagattgccgaacagattggcaccagcgagcgcatggtgaaaaagtacatg
gcacaggtcatgtatcagtgcatggtgcgtgaactgtccgcacgtgccgatgagtgtcga
ccatga
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