Pseudomonas amygdali: BKM19_017360
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Entry
BKM19_017360 CDS
T05354
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
BKM19_017360
09124 Replication and repair
03420 Nucleotide excision repair
BKM19_017360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pamg03021
]
BKM19_017360
03036 Chromosome and associated proteins [BR:
pamg03036
]
BKM19_017360
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_017360
Enzymes [BR:
pamg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
BKM19_017360
Transcription machinery [BR:
pamg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
BKM19_017360
Chromosome and associated proteins [BR:
pamg03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
BKM19_017360
DNA repair and recombination proteins [BR:
pamg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
BKM19_017360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AVB15143
UniProt:
A0AB35R4T1
LinkDB
All DBs
Position
complement(3513278..3515605)
Genome browser
AA seq
775 aa
AA seq
DB search
MTPTAPVKPDSEPALISESPARYVVAVRALCEFTAKVGDLDLRFTPSPTAQEGIAGHRTV
ASRRGADYQAELSLSGDYRELTVRGRADGYDAGRNQLEEVKTYRGELDAMPANHRQLHWA
QVKVYGWLLCQRLQLEQVTLALVYFNIVSEQETLIRESFSATTLQQFFEQQCTIFLGWAQ
QQMAHTQALHKMLGSLKFPHASFRTGQRVLAESVYKAVSTGCCLMAQAPTGIGKTVGTLF
PLLKAAPGQQLDKIFFLTAKTPGRRLALDALEVINHSAPELKLRVLELVARDKACEHLDK
ACNGDSCPLANGFYDRLPAARAAALESPWLNQASVREAALRHQVCPYYLSQELAHWADVV
IADYNYYFDLSALLFGLGQLNQWRVAVLVDEAHNMVERARQMYSASLDQSQLKALIQTSP
EPVKKALQRLDRQWNALHKVQPAAYQAYSAAPEKFTGSLNQCISTIGDHFNEHPQAVDGT
LQGFYLEAIGFARIAELFDEHFIFDITRREAGGKRILSRLSLRNVVPARFIRPRLTAARS
TVLFSATLNPRHYYADLLGLPVNTAWIDVESPFNHDQLDVRIVSRISTRFTHRQASLAPI
VELMAEQFEARPGNYLAFFSSFDYLQQVAELMAQNHPHITLWQQARGMGESERHAFLDRF
TLSSQGIGFAVLGGAFGEGIDLPGARLIGAFIATLGLPQLNPVNEQFKQRMAALFGAGYD
YTYLYPGVQKVVQAAGRVIRSQSDRGVVMLIDDRFAEHKVRQLFPAWWRPETSTA
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
gtgaccccgaccgcccctgtaaaacccgactccgagccagccctcatcagcgaatcgcct
gcacgttatgtcgtggccgtgcgcgcactgtgcgagttcaccgccaaggtcggcgatctt
gacctgcgcttcacaccatcgccaacggctcaggaagggattgccggacaccgtacggtc
gcgtcgcgtcgtggtgctgactaccaggccgagctctcattgagtggtgactatcgcgag
ctgacggtaaggggcagggcggacgggtacgacgccggtcgcaatcaattggaagaagtg
aagacctatcgcggcgagctggatgcgatgcctgccaaccaccgtcaattgcactgggca
caggtgaaggtctacggctggctactttgccagcgtctgcaactggagcaagtgacgctg
gcactggtgtatttcaacattgtcagcgagcaggaaaccctgattcgcgagtcattcagt
gcaacgacgctgcaacagttcttcgagcaacagtgcacgatattcctcggctgggcgcag
cagcaaatggcgcatacgcaggcgctgcacaagatgctgggcagcctgaagttccctcat
gcgtcctttcgtaccgggcaacgggtgctggccgagtcggtgtacaaggcggtgagcacc
ggctgttgtctgatggctcaggcacccacgggcatcggcaagacggtgggcacgctgttt
ccattgctcaaggcggcgcccggtcagcagctcgacaagattttctttctcaccgccaag
actcccgggcgtcggttggcgctggatgcgcttgaggtcatcaatcacagtgcgccggag
ctaaagctgcgggtgctggaactggtggcgcgggacaaggcctgcgagcatctggacaag
gcttgtaacggagattcctgtccactggccaatggcttttacgatcgtctgccagcggcc
cgcgccgctgcacttgagtcgccctggctgaatcaggccagcgtgcgcgaggccgcattg
cggcatcaggtctgtccgtattacctcagccaggaactggcacactgggctgatgtagta
atcgctgattacaattattacttcgacctcagtgcgctgctgttcggcctcggccagctc
aatcagtggcgcgtggcggtgctggtcgacgaagcgcacaacatggtcgagcgggcccgg
cagatgtacagcgccagtcttgatcagagccagttgaaagccctgatccagacgtcgccc
gaaccggttaaaaaagccttgcagcgtctcgaccggcaatggaatgcgctgcacaaggta
cagcccgctgcctatcaggcgtattcggcggcaccggaaaaattcaccggcagcctgaac
cagtgcatctcgaccatcggtgatcatttcaacgagcacccgcaggcagtggacggcacg
ttgcagggtttctatctggaagccatcggctttgcgcgcatcgccgagctgttcgacgag
catttcatattcgacatcacccggcgcgaggcgggcggcaagcgcattctgtcgcgcctc
agcctgcgcaacgtggttccggcgcgcttcatccgtccgcggctgaccgccgcgcgcagc
accgtgctgttttccgctacgctcaacccgcggcattactatgcggacctgctcgggctg
ccggtcaacaccgcgtggatcgatgtggaatcaccgtttaatcacgaccaactcgacgtg
cggattgtcagccgtatttccacccgtttcactcatcgtcaggcttcgctggcaccgatt
gtcgagctgatggccgagcagttcgaagcgcggccgggtaactatctggcgtttttcagc
agttttgattacctgcaacaagtggctgaactgatggcgcagaatcatccgcacatcacc
ctctggcagcaggcacgtggcatgggcgagagtgagcgtcatgcttttctcgaccgcttt
accctgagcagtcagggcatcggttttgccgtactgggcggtgcctttggtgagggcatc
gacttgccgggcgcacggttgatcggcgcgttcatcgccacgctggggctgccgcagctc
aacccggtcaacgagcagttcaagcagcgcatggccgcattgttcggtgctggctacgac
tacacctatctttaccccggcgtgcaaaaggtggtgcaggccgctggacgggtgatccgc
agccagagtgatcgtggcgtggtgatgctgatcgacgatcgttttgccgagcacaaggtc
aggcagctgtttccggcgtggtggcggcctgaaacgtcaacggcttag
DBGET
integrated database retrieval system
