KEGG   Pseudomonas amygdali: BKM19_017360
Entry
BKM19_017360      CDS       T05354                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
pamg  Pseudomonas amygdali
Pathway
pamg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pamg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    BKM19_017360
  09124 Replication and repair
   03420 Nucleotide excision repair
    BKM19_017360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pamg03021]
    BKM19_017360
   03400 DNA repair and recombination proteins [BR:pamg03400]
    BKM19_017360
Enzymes [BR:pamg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     BKM19_017360
Transcription machinery [BR:pamg03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     BKM19_017360
DNA repair and recombination proteins [BR:pamg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     BKM19_017360
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 DEAD Helicase_C
Other DBs
NCBI-ProteinID: AVB15143
UniProt: A0A2S4INL9
LinkDB
Position
complement(3513278..3515605)
AA seq 775 aa
MTPTAPVKPDSEPALISESPARYVVAVRALCEFTAKVGDLDLRFTPSPTAQEGIAGHRTV
ASRRGADYQAELSLSGDYRELTVRGRADGYDAGRNQLEEVKTYRGELDAMPANHRQLHWA
QVKVYGWLLCQRLQLEQVTLALVYFNIVSEQETLIRESFSATTLQQFFEQQCTIFLGWAQ
QQMAHTQALHKMLGSLKFPHASFRTGQRVLAESVYKAVSTGCCLMAQAPTGIGKTVGTLF
PLLKAAPGQQLDKIFFLTAKTPGRRLALDALEVINHSAPELKLRVLELVARDKACEHLDK
ACNGDSCPLANGFYDRLPAARAAALESPWLNQASVREAALRHQVCPYYLSQELAHWADVV
IADYNYYFDLSALLFGLGQLNQWRVAVLVDEAHNMVERARQMYSASLDQSQLKALIQTSP
EPVKKALQRLDRQWNALHKVQPAAYQAYSAAPEKFTGSLNQCISTIGDHFNEHPQAVDGT
LQGFYLEAIGFARIAELFDEHFIFDITRREAGGKRILSRLSLRNVVPARFIRPRLTAARS
TVLFSATLNPRHYYADLLGLPVNTAWIDVESPFNHDQLDVRIVSRISTRFTHRQASLAPI
VELMAEQFEARPGNYLAFFSSFDYLQQVAELMAQNHPHITLWQQARGMGESERHAFLDRF
TLSSQGIGFAVLGGAFGEGIDLPGARLIGAFIATLGLPQLNPVNEQFKQRMAALFGAGYD
YTYLYPGVQKVVQAAGRVIRSQSDRGVVMLIDDRFAEHKVRQLFPAWWRPETSTA
NT seq 2328 nt   +upstreamnt  +downstreamnt
gtgaccccgaccgcccctgtaaaacccgactccgagccagccctcatcagcgaatcgcct
gcacgttatgtcgtggccgtgcgcgcactgtgcgagttcaccgccaaggtcggcgatctt
gacctgcgcttcacaccatcgccaacggctcaggaagggattgccggacaccgtacggtc
gcgtcgcgtcgtggtgctgactaccaggccgagctctcattgagtggtgactatcgcgag
ctgacggtaaggggcagggcggacgggtacgacgccggtcgcaatcaattggaagaagtg
aagacctatcgcggcgagctggatgcgatgcctgccaaccaccgtcaattgcactgggca
caggtgaaggtctacggctggctactttgccagcgtctgcaactggagcaagtgacgctg
gcactggtgtatttcaacattgtcagcgagcaggaaaccctgattcgcgagtcattcagt
gcaacgacgctgcaacagttcttcgagcaacagtgcacgatattcctcggctgggcgcag
cagcaaatggcgcatacgcaggcgctgcacaagatgctgggcagcctgaagttccctcat
gcgtcctttcgtaccgggcaacgggtgctggccgagtcggtgtacaaggcggtgagcacc
ggctgttgtctgatggctcaggcacccacgggcatcggcaagacggtgggcacgctgttt
ccattgctcaaggcggcgcccggtcagcagctcgacaagattttctttctcaccgccaag
actcccgggcgtcggttggcgctggatgcgcttgaggtcatcaatcacagtgcgccggag
ctaaagctgcgggtgctggaactggtggcgcgggacaaggcctgcgagcatctggacaag
gcttgtaacggagattcctgtccactggccaatggcttttacgatcgtctgccagcggcc
cgcgccgctgcacttgagtcgccctggctgaatcaggccagcgtgcgcgaggccgcattg
cggcatcaggtctgtccgtattacctcagccaggaactggcacactgggctgatgtagta
atcgctgattacaattattacttcgacctcagtgcgctgctgttcggcctcggccagctc
aatcagtggcgcgtggcggtgctggtcgacgaagcgcacaacatggtcgagcgggcccgg
cagatgtacagcgccagtcttgatcagagccagttgaaagccctgatccagacgtcgccc
gaaccggttaaaaaagccttgcagcgtctcgaccggcaatggaatgcgctgcacaaggta
cagcccgctgcctatcaggcgtattcggcggcaccggaaaaattcaccggcagcctgaac
cagtgcatctcgaccatcggtgatcatttcaacgagcacccgcaggcagtggacggcacg
ttgcagggtttctatctggaagccatcggctttgcgcgcatcgccgagctgttcgacgag
catttcatattcgacatcacccggcgcgaggcgggcggcaagcgcattctgtcgcgcctc
agcctgcgcaacgtggttccggcgcgcttcatccgtccgcggctgaccgccgcgcgcagc
accgtgctgttttccgctacgctcaacccgcggcattactatgcggacctgctcgggctg
ccggtcaacaccgcgtggatcgatgtggaatcaccgtttaatcacgaccaactcgacgtg
cggattgtcagccgtatttccacccgtttcactcatcgtcaggcttcgctggcaccgatt
gtcgagctgatggccgagcagttcgaagcgcggccgggtaactatctggcgtttttcagc
agttttgattacctgcaacaagtggctgaactgatggcgcagaatcatccgcacatcacc
ctctggcagcaggcacgtggcatgggcgagagtgagcgtcatgcttttctcgaccgcttt
accctgagcagtcagggcatcggttttgccgtactgggcggtgcctttggtgagggcatc
gacttgccgggcgcacggttgatcggcgcgttcatcgccacgctggggctgccgcagctc
aacccggtcaacgagcagttcaagcagcgcatggccgcattgttcggtgctggctacgac
tacacctatctttaccccggcgtgcaaaaggtggtgcaggccgctggacgggtgatccgc
agccagagtgatcgtggcgtggtgatgctgatcgacgatcgttttgccgagcacaaggtc
aggcagctgtttccggcgtggtggcggcctgaaacgtcaacggcttag

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