KEGG   Pseudomonas amygdali: BKM19_019255
Entry
BKM19_019255      CDS       T05354                                 
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
  KO
K01825  3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
Organism
pamg  Pseudomonas amygdali
Pathway
pamg00071  Fatty acid degradation
pamg00280  Valine, leucine and isoleucine degradation
pamg00310  Lysine degradation
pamg00362  Benzoate degradation
pamg00380  Tryptophan metabolism
pamg00410  beta-Alanine metabolism
pamg00640  Propanoate metabolism
pamg00650  Butanoate metabolism
pamg00907  Pinene, camphor and geraniol degradation
pamg00930  Caprolactam degradation
pamg01100  Metabolic pathways
pamg01110  Biosynthesis of secondary metabolites
pamg01120  Microbial metabolism in diverse environments
pamg01200  Carbon metabolism
pamg01212  Fatty acid metabolism
Module
pamg_M00087  beta-Oxidation
pamg_M00957  Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:pamg00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00640 Propanoate metabolism
    BKM19_019255 (fadB)
   00650 Butanoate metabolism
    BKM19_019255 (fadB)
  09103 Lipid metabolism
   00071 Fatty acid degradation
    BKM19_019255 (fadB)
  09105 Amino acid metabolism
   00280 Valine, leucine and isoleucine degradation
    BKM19_019255 (fadB)
   00310 Lysine degradation
    BKM19_019255 (fadB)
   00380 Tryptophan metabolism
    BKM19_019255 (fadB)
  09106 Metabolism of other amino acids
   00410 beta-Alanine metabolism
    BKM19_019255 (fadB)
  09109 Metabolism of terpenoids and polyketides
   00907 Pinene, camphor and geraniol degradation
    BKM19_019255 (fadB)
  09111 Xenobiotics biodegradation and metabolism
   00362 Benzoate degradation
    BKM19_019255 (fadB)
   00930 Caprolactam degradation
    BKM19_019255 (fadB)
Enzymes [BR:pamg01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.35  3-hydroxyacyl-CoA dehydrogenase
     BKM19_019255 (fadB)
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.1  Hydro-lyases
    4.2.1.17  enoyl-CoA hydratase
     BKM19_019255 (fadB)
 5. Isomerases
  5.1  Racemases and epimerases
   5.1.2  Acting on hydroxy acids and derivatives
    5.1.2.3  3-hydroxybutyryl-CoA epimerase
     BKM19_019255 (fadB)
  5.3  Intramolecular oxidoreductases
   5.3.3  Transposing C=C bonds
    5.3.3.8  Delta3-Delta2-enoyl-CoA isomerase
     BKM19_019255 (fadB)
SSDB
Motif
Pfam: 3HCDH_N ECH_1 3HCDH ECH_2 NAD_binding_2
Other DBs
NCBI-ProteinID: AVB15465
UniProt: A0AB35QU39
LinkDB
Position
complement(3941172..3943337)
AA seq 721 aa
MIYEGKAITVKALESGIVELNFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS
GKDVFIVGADITEFVDNFKLPEAELVAGNLQANRIFSDFEDLGVPTVVAINGIALGGGLE
MCLAADYRVISSSARIGLPEVKLGLYPGFGGTVRLPRIIGADNAIEWIASGKESSAEDAL
KVGAVDAVVAPEKLQAAALDLIQRAISGELDYKAKRQPKLDKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEIEAAGFVKMAKTSAAQSLIGLFLNDQEL
KKKAKGYDAVAKEVKQAAVLGAGIMGGGIAYQSAVKGTPILMKDIREEAIQLGLNEASKL
LGSRLEKGRLTAAKMAEALNAIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVEANVG
EHTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEEAVATTVA
YARKMGKNPIVVNDCPGFLVNRVLFPYFGGFARLVSAGVDFVRIDKVMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSVVDALYEAKRLGQKNGKGFYAYETDKKGKP
KKVNDPAVLDVLKPIVYEQREVSDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLIY
GIGFPPFRGGALRYIDSIGVAEFVALADQYAELGALYQPTAKLREMASKGQSFFGQASSE
E
NT seq 2166 nt   +upstreamnt  +downstreamnt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagtggcatcgtcgaattg
aatttcgatctcaagggtgagtccgtcaacaagttcaaccgcctcaccctcaatgaattg
cgtcaggcagtcgatgcaatcaaggccgatgcctcggtcaagggcgtgatcgtcagcagt
ggcaaggacgtgttcatcgtcggtgccgacatcaccgagttcgtcgacaacttcaagttg
ccggaagccgaactggttgcgggcaatctgcaagccaacaggattttcagcgatttcgaa
gatctgggcgtgcccaccgttgtcgctatcaacggcattgcgctgggcggcggtctggaa
atgtgcctggccgcagactatcgggtcatctccagcagtgctcgcatcggtctgcccgaa
gtcaagctgggcctataccctggtttcggcggtactgtgcgtttgccgcgcatcatcggt
gctgacaacgcaatcgaatggatcgcgtcaggcaaggaaagctccgcagaggatgctctg
aaggttggtgccgttgatgcggtagttgcacccgagaagcttcaggccgcggcccttgac
ctgattcagcgcgccatttccggcgagctcgactacaaggccaagcgccagcccaagctg
gacaagctcaagctcaatgccatcgagcaaatgatggcattcgaaaccgccaaaggtttt
gtcgcaggtcaggccggaccgaactatccggcaccggtcgaggccatcaagaccatccag
aaagccgccaatttcggtcgtgacaaggcgctggaaatcgaagccgccggtttcgtgaaa
atggccaagacatctgctgcgcagagccttatcggcctgtttctgaacgaccaggaactg
aaaaagaaagccaagggctacgacgcagtcgccaaggaagtgaaacaggccgccgtactg
ggcgccgggatcatgggcggcggcattgcctatcagtcggcagtcaagggcacgcccatc
ctgatgaaggacatccgcgaagaagccattcagctgggtctgaacgaagcctccaaactg
cttggcagccgtctggaaaaaggccgtctgactgcggcgaagatggccgaagcgcttaac
gcgattcgtcctacgctttcctacggcgatttcggcaacgtcgacctggtggtcgaagcg
gttgtcgaaaacccgaaggtcaagcaggcggtactggcggaagtcgaagccaacgtgggt
gagcacaccattctggcgtccaacacttcgaccatctcgatcagcttgctggccaaggcc
ctcaagcgtccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggtggaagtgatccgtggcgagaagtccagcgaagaagcggtcgccacgaccgttgcc
tacgccaggaaaatgggcaagaacccgattgtggtcaacgactgcccgggctttctggtc
aaccgcgtactgtttccgtacttcggcggttttgccaggctggtcagcgcaggcgtggat
ttcgtgcgcatcgacaaggtcatggagaaattcggctggccgatggggcctgcctacctg
atggacgttgtcggtatcgacaccggccaccatggccgtgatgtcatggccgaaggtttc
cctgaccggatgaaggatgatcgccgctctgtggttgacgcgctgtatgaagccaaacgt
ctgggacagaagaacggcaagggcttctacgcctacgagaccgacaagaagggcaagccc
aagaaggtcaatgacccggctgtgctggatgtgctcaagccgatcgtctacgaacagcgt
gaagtgagcgatgaagacatcatcaactggatgatgatcccgttgtgcctggaaacggtt
cgctgcctggaagacggcatcgtcgaaaccgctgccgaagccgacatgggcctgatctac
ggtattggtttccctccattccgtggcggtgcgctgcgctacatcgactccatcggtgtt
gccgaattcgttgccctggctgaccaatacgccgagctgggtgccctgtatcaaccgacc
gcgaagctgcgtgaaatggccagtaaaggccagagcttcttcggtcaagcgtcttccgag
gaatga

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