Pseudomonas amygdali: BKM19_021315
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Entry
BKM19_021315 CDS
T05354
Name
(GenBank) chromosome segregation protein SMC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pamg
Pseudomonas amygdali
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_021315
DNA repair and recombination proteins [BR:
pamg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BKM19_021315
Archaeal homologous recombinant proteins
BKM19_021315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
SMC_N
nSTAND3
ABC_tran
MMR_HSR1
AAA_22
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
AVB15817
UniProt:
A0AB35R1X2
LinkDB
All DBs
Position
4363094..4366738
Genome browser
AA seq
1214 aa
AA seq
DB search
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAIPR
LSNIGQSKVPDIDGDITTSDPRTLLRRGTGSGYAEVDFIGIDQRRYRARWETNRARDNAT
KKLQASRQTLTDLDSEQVLSNQSKREFEQLIEQRLGLNFEQFTRAVMLAQSEFSAFLKAD
DKERSELLEKLTNTAIYSQLGRRAYSKSKEAEEALKTLTAQASNIVPLAPELLAELEQRL
NDAQQQLKAHQAQQRQLEIKQQWLIELHRLRDEQLAAQEAITRAQQAWDDQSGARQTLGQ
LERLGPQRHRFTRRVTLNAQLNPLAEQIRQHQQQQASLQDQQQQLETRRTQAHASLLAAQ
QTHSNAKPLLQQAFDTQNTLNHLAQELAKVSDLHQQTGQLCTEGQASLHILLDQQQQVSQ
RLERIAEQLEHSSELAPLAQAWSAWRDRLKSLTLIANRLKHGQSELPALQQRASTADQQL
TEQRSALELLYREADCEVDAVTEQVQILGSLLQDNRKQQRAFEDLARLWASQQDVDRQLA
DLAQQQQSAQQQREQLNSEGIRVRDELTVAEQTLTVTRQLLERQRLARSASVEELRVQLQ
DDQPCPVCGSIEHPWHQPEALLESLTQHDDNEQASAQKAVDQLTEQRNQLREQVGGVIAR
QKELLRQHEQLTLRHQALAPDLESHPLAAQLLDHDAGKRDSWLSQQLNNLSEVITRDEQR
QEALLTLQKDAARLQQQLQAATEASQTAASHVAEQLKQLDVDRQRLEEELSAFTPLVSPH
VLEGLRSDASATVMQLEQQVTQRLDQLEQQHEEQQEQSERQQKIEKHQIEQQTRLHRQTE
LAQEVARLGEQQQASQQALTGLLGEHATAEHWQQALENAIEQARQTESSAAEALQQIQSQ
LIQLAAELKSAQQQQQSLQQELAELDVQISEWRGQHPELDDTALDTLLTYDDAHVEQLRL
QLNATDKALEQAKVLLQERDQRLQQHQAQHSDLSDSTQLAAALQQAHEQSALGEQQCADL
RAELSEDQRRRNANSELQARINDANDEYLRWARLASLIGSAEGDKFRKIAQAYNLDLLVH
HANAQLRQLVRRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVGVISHVQEMHERIPVQIKV
RRQGNGLSTIEVGN
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatccttgccattcgcctgaaaaaccttgcctcgctggccgggccgtttgaaatc
gatttcactgccgagccgctggccagcgccggtctgttcgccattaccggcccgaccggc
gcaggtaaaagcaccctgctcgacgccttgtgcctggcgctgttcggagcgattccgcgg
ctgagtaatatcggccagtccaaggtcccggacatcgacggcgacatcaccaccagcgac
ccgcgcaccctgctgcggcgtggcacgggcagcggttacgcagaagtagactttatcggc
atcgatcagcggcgttatcgcgcccgctgggaaaccaaccgcgcacgcgacaacgcgacc
aaaaagctgcaggccagccgccagaccctgaccgacctggacagcgaacaggtgctcagc
aaccagagcaagcgtgaattcgagcaactgatcgagcagcgtctggggctgaatttcgag
caatttacccgcgccgtgatgctcgctcagagcgagttcagtgccttcctcaaggccgac
gacaaggaacgcagcgaactgctggagaagctgaccaataccgctatctacagccagctc
gggaggcgcgcctacagcaagagcaaagaggccgaggaagcgcttaaaactctcactgct
caagccagcaacatcgtcccgctggctccggagctgctggctgaactggaacaacgcctc
aacgacgcacagcagcagctcaaggcgcaccaggcacagcaaaggcaactggaaatcaaa
cagcagtggctgatcgagctacaccgcctgcgcgatgaacagcttgccgcgcaggaggcg
atcacccgtgctcaacaggcctgggacgaccagagcggtgcacgtcagaccctcggccaa
ctggaacgcctgggcccgcagcgccaccgtttcacgcgtcgggtcacgctgaacgcccag
ctcaacccgctggcggaacaaattcgtcagcatcagcaacagcaggcttcgctgcaagat
cagcagcaacaactggagacccgccgcacccaggcgcacgccagtctgctggcggcccag
caaacccacagcaacgccaaaccgctgttgcagcaggcttttgacacacagaacacgctg
aaccacctggcccaggaactggccaaggtgtctgacctgcatcagcaaaccggacagctt
tgtactgagggtcaggccagcctgcacattctgctcgaccagcagcaacaggtttcgcag
cgccttgaacgtattgccgagcaactggagcacagcagcgaactggccccgctggctcag
gcctggagcgcctggcgcgaccgcctgaaatccctcacgctgatcgccaaccgcctcaag
cacgggcagagtgaactgcctgcactgcagcaacgtgccagcacggccgatcaacagttg
accgagcaacgcagcgcgctggaattgctgtaccgcgaagccgattgcgaagtggatgcg
gtgactgaacaggtacagattctcggcagcctgctgcaggacaatcgcaagcagcaacgc
gcattcgaagacctggcccgtctgtgggccagccagcaggacgtagaccgacaactggcc
gatctggcgcagcaacagcaaagcgctcagcagcaacgcgaacagctcaacagcgaaggc
attcgcgttcgtgatgaactgaccgtcgccgaacagaccctgaccgttacccggcaactg
ctggaacgtcaacgcctggcccgcagcgccagcgttgaagaattgcgcgtccagttgcag
gacgaccagccctgcccggtctgtggcagcatcgaacacccttggcatcagccggaagct
ttgctggaaagcctcacgcaacatgatgacaacgagcaggccagcgcgcagaaggcggtg
gaccaactgaccgaacagcgcaaccaattgcgcgagcaggttggcggcgtgatcgctcgc
cagaaagagctgcttcgccaacacgagcagctcaccctgcgtcatcaagccctggcaccg
gatctggaatctcatcccctcgcggctcaattgctcgaccacgacgcaggcaagcgtgac
agctggttgagccagcaattgaataacctgagcgaagtcatcacccgtgacgagcaacgc
caggaagcgttgctgaccctgcagaaagacgccgcccgcttgcagcagcaacttcaggca
gccacagaagccagtcagaccgcggcgagccatgttgccgagcagctcaagcagctggac
gtcgacaggcagcggctggaagaagaactgagcgcattcacgccgctggtctcgccacac
gtgcttgaggggctgcgcagcgatgcatcggcaacggtgatgcagcttgagcagcaggtg
actcagcgtctggatcaacttgagcagcaacacgaagagcagcaggagcagagcgagcgc
cagcagaagatcgaaaagcatcagatcgagcagcagactcgcctgcaccgccagaccgaa
ctggcgcaggaagtcgcccggctaggcgagcagcaacaggccagccagcaggcactgacc
ggcttgctgggcgagcatgcgactgccgagcactggcaacaggcgctggaaaacgccatc
gagcaagccaggcaaaccgaaagctcggccgccgaggctctgcagcagattcaaagccag
ttgatccagctggctgccgaactcaagtccgcccagcaacaacagcaatccttgcagcag
gaactggctgaacttgatgtgcagatcagcgagtggcgcggccagcatcccgagctggac
gataccgcgctcgacacgctgctgacttacgatgacgcgcatgtcgagcaactgcgtctg
caactgaacgctaccgacaaagcgctggagcaggcaaaagtattgctgcaggagcgcgat
cagcgcctgcaacagcatcaggcgcaacacagcgaccttagcgacagcacgcaactggcg
gcagcgctgcaacaggcccatgaacagtccgcgctcggcgagcagcaatgcgccgacctg
cgcgccgaactcagcgaagatcagcgccgtcgcaacgccaacagcgagttgcaggcgcgc
atcaacgatgccaatgacgaatacctgcgctgggcacgcctggcatcgctgatcggctcg
gccgaaggcgacaaattccgcaagatcgcccaagcctacaaccttgacctgctggtccac
catgccaatgcgcagctccggcaactggtgcgccgctaccgcctgaaacgcggcggcagc
atgctcggcctgctggtcatggacaccgaaatgggcgacgaactacgctcggttcactcg
ctgtcgggtggcgaaaccttcctggtctcgctggcgttggcgctgggactggcgtcgatg
gcctccagcacgctgcgtatcgaatcgctgttcatcgacgagggcttcggcagcctcgac
ccggaatcgctgcaactggcgatggacgcactggacggcttgcaggcacagggtcgcaag
gtcggcgtgatctcccacgtacaggaaatgcatgaacggattccggtgcagatcaaagtg
cgtcgccaggggaatgggttgagcacaatcgaggtgggtaactga
DBGET
integrated database retrieval system
