Pseudomonas amygdali: BKM19_021615
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Entry
BKM19_021615 CDS
T05354
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKM19_021615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pamg03019
]
BKM19_021615
03009 Ribosome biogenesis [BR:
pamg03009
]
BKM19_021615
Enzymes [BR:
pamg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BKM19_021615
Messenger RNA biogenesis [BR:
pamg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKM19_021615
Ribosome biogenesis [BR:
pamg03009
]
Prokaryotic type
rRNA helicases
BKM19_021615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AVB15863
LinkDB
All DBs
Position
complement(4423119..4424798)
Genome browser
AA seq
559 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSGSSDRGDRPERERRAPVPLAE
GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTK
LKDTRVAGKQLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctctcgaacttcatccaaatatcgttgcagca
gtcgtcgccactggctacgaagagccttcggccattcagcagcaatcgatcccgattatt
ctcgccggtcacgacatgattggtcaggcgcaaaccggtacgggtaaaactgccgcgttc
gcactgcctatcctgcatcgcatcgacccgagcaagcgcgagccgcaagcactgatcctg
gccccgacccgcgaactggcacttcaggttgccaccgcgttcgagacctacgccaaacaa
atgccgggcgtgaccgttgtagcggtctacggcggcgcgccaatgggcccgcagctcaag
gccatccgcaacggcgcacaaatcgttgtcgccaccccgggccgtctctgcgaccacctg
cgtcgtgacgagaaagtcctggcaaccgtgaaccatctggttctcgatgaagcggacgaa
atgctcaagctgggcttcatggacgacctcgaagtcatcttcaaggccatgcctgaaacc
cgccagaccgtactgttctcggcaacgctgccacagtcgatccgtgccatcgccgagcgc
catctgcgcgatccgaagcacgtcaagatccagaccaagacccagaccgttaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaagacctccgctgtactgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtccgcaccaagcaggcgaccctggac
ctggcaagcgcccttgaagccaaaggctacaaggctgctgcactgaacggtgacatcgct
cagaaccagcgcgagcgcgttatcgattccctcaaggatggccgtctggacatcgttgta
gcgaccgacgttgctgcccgtggtcttgacgttccgcgtatcacccacgtattcaacgtg
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtaccggtcgtgccggt
cgcgaaggtcgtgcactgctgctggtaactcctcgcgagcgccgcatgctgcaggtgatc
gagcgtgtaaccggtcagaaggttgctgaagtccgcctgccggatgcccaggccgttctg
gatgcccgcatcaagaaactgaccaacagcctgtcgccactggttgccgatgccgaatcg
actcatggcgatctgctggatcgtctgactgccgacatcggttgcagcccgcgcgccctt
gctgctgcactgctgcgcaaggctaccaacggtcaggctctgaccctggcagctatcgag
cgcgagcgcccgctggttccgaacaacgcccctcgcggtgatcgtccagagcgtagcggc
agcagcgatcgcggtgatcgtcctgagcgtgagcgtcgtgcgccggtcccgctggccgaa
ggtcgtgctcgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgccaagaacctg
ctgggtgccattctcaacgaaggcggcctggcccgcgaagctatcggccgcatccaggtg
cgtgacagcttcagcctggtcgagctgccggaagatggtcttgagcgtctgctgaccaag
ctcaaggacacccgtgttgctggcaagcagctcaagctgcgtcgctatcgcgaagactga
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