Pseudomonas amygdali: BKM19_022040
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Entry
BKM19_022040 CDS
T05354
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pamg
Pseudomonas amygdali
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pamg03009
]
BKM19_022040
Enzymes [BR:
pamg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
BKM19_022040
Ribosome biogenesis [BR:
pamg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
BKM19_022040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
Methyltr_RsmB-F
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_11
PCMT
Cons_hypoth95
Methyltransf_15
Methyltransf_23
PDGF
Motif
Other DBs
NCBI-ProteinID:
AVB15942
UniProt:
A0AB35QWU7
LinkDB
All DBs
Position
complement(4506694..4508049)
Genome browser
AA seq
451 aa
AA seq
DB search
MAKHERGLRFQPTGGVKTVQIPAGKKQRLTIERLSDDGRGIAFLDGKTWFVAGSLAGEEV
EARVLNARGKVVEARTERVFNASTMRRAPACEYFGRCGGCSVQHVPHEEQLALKQRMLAE
QLLRVANAVPDEWAAPLSGAELAYRRRARVAVRWDAKAKRLDVGFRAAASQDIVSIEHCP
VLVQALQPIMNELPGMLKNFSKPQALGHVELFSGVATAVLLRHTAPLAEADLALLQAFCS
KHGAQLWLHGDGEPQPASPGDTLGYRLEPWNLQLAWRPGDFIQVNAAVNTAMIEQALQWL
APAKDERVMDLFCGLGNFALPLAGLAKEVVAVEGVATMVERAAVNAMSNDLHNVQFFQAD
LSQPLTHADWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELI
SQGYRLKRAGILDMFPQTAHVEAMALFEMSK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacatgaacgaggtctgcgctttcagcccacgggcggcgtcaagaccgtgcag
attcctgccggtaaaaaacagcggctgactatcgagcgcctgtccgatgacggtcgcggt
atcgcttttctcgacggcaagacctggtttgtcgctggcagtctggcgggcgaggaggtc
gaggcgcgggtgctcaatgcgcgcggcaaggtcgtcgaggcgcgcaccgagcgggtcttc
aacgccagcaccatgcgtcgcgctccggcctgtgagtatttcggtcgctgcggcggctgc
agtgttcagcatgtgccccacgaagaacagcttgccctgaaacagcgcatgctcgccgag
caattgttgcgcgtggcgaatgctgtgccggatgaatgggcggcacctttgagcggtgcc
gagctggcctatcgccgacgcgcgcgggtcgcggttcgctgggatgccaaggccaaaagg
ctggacgtggggttccgcgcagccgccagtcaggacatcgtcagcatcgaacactgtccg
gtgctggtacaggccttgcaacccatcatgaatgagttgcctggcatgctgaaaaacttc
agcaaaccgcaggcgctgggtcacgtcgagctgttcagtggggttgcgactgccgtgttg
ttgcgccacaccgcgccgcttgccgaggccgacctggcgctgttgcaggcgttttgctcc
aagcacggcgcgcagctgtggctgcatggcgacggcgagccccaaccggccagccccggc
gatacgctgggctaccggctggagccgtggaacctgcaactggcctggcgaccgggagat
ttcattcaggtcaacgcggcggttaacaccgcgatgatcgagcaggctctgcaatggctg
gcgcctgccaaagatgaacgggtaatggacctgttttgcggtctgggcaattttgccttg
ccactggcgggtctggcgaaggaagtggtggcggtcgaaggcgttgcgaccatggtcgag
cgtgcagccgtcaacgcaatgagtaatgatctgcacaatgtgcagttttttcaggcggat
ctttcccagccgctgacacacgccgactgggcggcggaagggttttctgcggtactcttg
gacccaccgcgtgacggggcctttgaagtggttcgccagatcagaaaaacgggtgcccgg
cgactgctttatgtttcatgcaacccggcaactttggctcgtgacacggtcgaactgatc
agtcagggctaccgattaaaacgtgccggaatcctcgatatgtttccacagacggcgcat
gtcgaggcgatggctttatttgaaatgagtaagtga
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