Pseudomonas amygdali: BKM19_022230
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Entry
BKM19_022230 CDS
T05354
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKM19_022230 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pamg03019
]
BKM19_022230 (recQ)
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_022230 (recQ)
Enzymes [BR:
pamg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BKM19_022230 (recQ)
Messenger RNA biogenesis [BR:
pamg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKM19_022230 (recQ)
DNA repair and recombination proteins [BR:
pamg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BKM19_022230 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
Sigma70_r4_2
GerE
HTH_23
HTH_29
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AVB15977
LinkDB
All DBs
Position
complement(4549812..4551941)
Genome browser
AA seq
709 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVANGGDALVLMPTGGGKSLCFQVPGLLREGLC
VVVSPLIALMDDQVATLDELGVSAAALNSTLSAEQQRELANRIRLGEVKMLYLAPERLVQ
PRMLSFLQNLQIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPDVPRIALTATADKRT
REEIVTRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK
VDEVAVFLSENGYPALPYHAGLPSETRAANQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLMLKQMLQNSEGDERHKRLEQHK
LDAMLALCEETRCRRQTLLAYFDEDMPKPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKSNDKVESFGHQHLSVFGVGKARTEAEWRSLFRQLVARGLADIDLE
GYGGLRLSDTCRPLLRGEVTLELRRDLKPQTTSKSSSGSPASQLVRGEEREQWEALRALR
RKLAEEHAVPPYVIFPDSTLLEMLRSKPGSMAEMARVGGVGARKLERYGEAFLEVLSGKA
EAPRVVADVRHELISLARAGMTPTQIAGQLQCSEKNVYTLLAEAIGKQQLSIEQALDLPE
DLLGEVQDAFLDGEGELPPVSAIAEQFAGRVPEGVLYCVRAALQSEFEV
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgcttgagcaggcacaacgcgtacttaaagacatcttcggttacgacagctttcgtggt
cgccagggtgccattatcgagcgtgtagccaacggtggcgatgcactggtgctgatgccg
accggtggtggcaagtccctgtgttttcaggtgccggggctgttgcgtgaggggctctgt
gtggtcgtctcgccgctcattgcgctgatggacgatcaggtcgccacgctggatgaactc
ggtgtgtccgctgctgcgctcaactccaccctcagtgccgagcaacagcgcgaactggct
aaccgcattcgcctgggcgaagtgaaaatgctctacctcgccccggagcgcctggtgcag
ccgcgcatgctgtcgttcctgcaaaaccttcaaattgccctgtttgccattgatgaagcg
cactgcgtatcgcaatggggtcatgatttccgccctgagtacctgcaactggggcaactg
gccgagctgtttccggatgtgccgcgcattgcgctgactgccaccgccgacaagcgtacc
cgtgaagaaatcgtcacgcgcctgcacctgcagaacgccgagcgctttctgtccagcttc
gaccggccaaacatcttctatcgcatcgtgcccaaggaacagccgcgcaaacagctgctg
gcgttcctctccgaacggcgcagcgatgctggcattgtctactgcctgtcgcgcaagaaa
gtcgatgaagtggccgtttttctgagcgaaaacggctatcccgcgctgccgtatcacgcc
gggctgccctcggaaacacgtgctgccaaccagaaacgcttccttaatgaggaagggctg
atcatggtggcgaccatcgcgttcggcatgggtatcgacaaacccaacgtgcgttttgtt
gcgcacatggacctgcccaaatcgcttgaggcctactatcaggaaaccggccgggccggg
cgtgatggcctgcctgccgatgcctggatggcttacggtctgcaagacgtgctgatgctc
aagcagatgttgcagaactccgaaggtgacgagcgccataagcgtctggagcagcacaag
ctcgacgccatgctcgccctgtgcgaagaaacccgttgccgccgacagaccctgctggcc
tatttcgacgaagacatgcccaagccatgcgggcattgcgacaactgcgtcgatggcgtg
cagacctgggatgccaccgagcctgcgcgtcaggcgctgtcggccatctaccgtaccggc
cagcgttatggcgtcggtcatctggtcgatgtgctgctgggcaaatccaacgacaaggta
gaaagcttcggccatcagcatctgtcggtgttcggggtcggcaaggcacgcaccgaggcc
gagtggcgctcgctgttccgccaactggtggcgcgggggctggcagacatcgaccttgaa
ggctatggtggcctgcgcttgagcgacacgtgccggcctttgctgcgtggcgaagttact
ctggaactgcgccgcgacctcaagccacaaaccacttcaaagagcagttccggcagcccg
gcgagccaactggtgcgcggcgaagagcgcgagcagtgggaggccttgcgtgccttgcgg
cgcaaactggccgaggaacatgccgtgccgccttacgtcattttcccggactcgaccctg
ctggaaatgctgcgcagcaaacccggatcaatggccgagatggcccgagtgggcggcgtg
ggcgcgcgcaagctggagcgttacggcgaggcctttcttgaagtgctcagtggcaaggcc
gaggcaccacgggtggtggccgatgtacgccacgagctgatcagcctggcgcgtgccggt
atgacccccacgcagattgccggtcagttgcagtgctcggaaaagaatgtctacaccctg
ttggccgaggccatcggcaagcagcagctgtccatcgagcaggcactggacttaccggaa
gacctgttgggcgaggttcaggatgcctttctcgatggcgaaggagaactaccaccggtg
tcggcgattgccgagcaatttgccgggcgggtgccggagggtgttttgtattgcgtgcga
gcggcgttgcaatcggaatttgaggtataa
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