Pseudomonas amygdali: BKM19_022530
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Entry
BKM19_022530 CDS
T05354
Name
(GenBank) ATP-dependent helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pamg
Pseudomonas amygdali
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pamg03009
]
BKM19_022530
Enzymes [BR:
pamg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BKM19_022530
Ribosome biogenesis [BR:
pamg03009
]
Prokaryotic type
rRNA helicases
BKM19_022530
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AVB16026
UniProt:
A0AB35R5Y2
LinkDB
All DBs
Position
complement(4608157..4609494)
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AA seq
445 aa
AA seq
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MFSEFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRK
VPDILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTM
LFSATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLAN
ETYQKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVAT
DVAARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVER
YLKQSFERRVIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKTAAKGPTKRKTVNR
PKSDLVSQDGMAPLKKRSTPAPAAE
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
gtgttttccgaattcgccctgcacgaacgcctgcttaaagctgtggccgagcttaaattt
gtcgagcctacgcccgtgcaggcggccgccattccgctcgcactggaagggcgcgacctg
cgggtgactgcgcaaaccggtagcggcaagaccgccgcatttgtgctgccgatcctcaac
cgtctgatcggcccggccaaggttcgtgtcgacatccgtgcggtgatcctgctgccgacc
cgtgagctggctcagcagacgctcaaggaagtcgagcgcttctcgcagttcaccttcgtc
aaggccggcctgatcaccggtggcgaggacttcaaggttcaggccgcgatgctgcgcaag
gtgccggacattctgatcggcacgccgggtcgtctgctggagcagttgaacgcaggcaat
ctggacctcaagcacgttgaagtactggtactggacgaagccgaccgcatgctggacatg
ggcttctctgaagacgtcgagcgtctggcaggcgaatgtgccggtcgcgagcagaccatg
ctgttctccgcaaccaccggtggtgccggcctgcgtgaaatgatcggcaaggtgctcaag
gatccgcagcatctgcaagtgaacagcgtcagtgagctggcttccggcacacgccaccag
atcatcaccgccgatcacaacgtgcataaagagcaggtgctgaactggctgctggccaac
gagacctaccagaaagccattattttcaccaacaccaaggcgatggccgaccgtttgtac
ggccgtctggttgcactggaatacaaggcgttcgtgctgcacggcgacaaggaccagaag
gaccgcaaggcggccatcgaccgtctgaagcagggcggtgccaagatcatggtcgcgacc
gatgtggcggctcgcggtcttgatgttgaaggtctggacatggtgatcaacttcgacatg
ccgcgcagcggtgacgattacgtccaccgcgtcggtcgtaccggccgtgcgggtagcgac
ggtctggcgatctcgctgatctgtcatggcgactggaacctgatgtcgagcgtcgagcgc
tacctcaagcagagctttgagcgtcgtgtcatcaaggaagtcaaaggcacctacggcggg
ccgaagaaggtcaaggcatcgggcaaggctgtaggcgtgaagaagaaaaagactgacgcc
aagggcgacaagaaaaagacagcggccaaggggccgaccaagcgcaagacggtcaaccgt
cccaagtccgatctggtcagccaggacggcatggcgccgctgaaaaaacgcagcaccccg
gccccggctgccgagtga
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