Pseudomonas amygdali: BKM19_022710
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Entry
BKM19_022710 CDS
T05354
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pamg
Pseudomonas amygdali
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pamg03019
]
BKM19_022710 (hrpA)
Enzymes [BR:
pamg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BKM19_022710 (hrpA)
Messenger RNA biogenesis [BR:
pamg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BKM19_022710 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_25
NACHT
T2SSE
Motif
Other DBs
NCBI-ProteinID:
AVB16055
UniProt:
A0AB35R7R0
LinkDB
All DBs
Position
complement(4650965..4654876)
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDQLLKNLDQAMISERHRLRRQLHDLRKKPDEAKLAQWVARVQASCAQVTARR
ESVPTIRYDDNLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVADELGTPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQHD
RFLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLQRFSEHFNDAP
VIEVSGRTFPVDLWYRPLTSEQDEEGNSVEEDLTVDQAILATLDELASFERSERKSPGDV
LVFLPGEREIRDAAEVLRKAQLRHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGLCVRLYS
EEDFNGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVNRENQLTPLGRQLARLPVDPRMGRMLLEAAKQGSLQEVLIVASAMSVQDVRERPPERQ
QAADQAHAQWKDADSDFAGLVNLWRGFEEQRQTLTASPLRNWCRRNFLNYLRLREWRDSH
RQLSLICRDLQLTVNKEPADYPKFHKAILSGLLSQIGQKADEGDYLGARQRRFWIHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIDSDWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPIDPVVSRELFIREGLVRGDILSRAKCLSANTRLLEQLDEL
EAKARRRDILADEDTLFSFYEARIPAEIHQTATFDSWYKTESQKNPQLLIMREEDVLARE
ASEVTAAQYPDTLHLGDLSLSLSYHFEPNHPRDGVTLRVPAPLLLSLPAERLEWLVPGLL
ETKSIALVRNLPKAVRKNFVPVPDFIKAALQRITFGEGSLPQALGRELLRMTGVRVSEEG
WAEAAQQLEGHLKMNLEIVDGSGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVQ
AKAFAAVAQKTQQNIAGLSMTVYPALVEEGGAVKEGRFSTQAEAEYQHRRALQRLLLQQL
AEPAKFLRNKLPGQTELALLHRELGRIDALIEDILLASLDSCVLEGEAELPRDGAGLLSL
AERKRADWTEHAERLAKLTLEILKLWHGLQKRFKGKIDLSQAVALNDIKAQLSKLVYPGF
VRETPAVWLKELPRYLKAIEMRLEKLPGQVQKDRVWSIELAGLWTQYQTRADKHAQEGKR
DPELALYRWWMEEYRVSLFAQQLGTKMPVSDKRLSKQWSQVEG
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaatcgccctctatcgaccaacttctgaaaaacctcgaccaagcgatgatc
agcgaacgtcatcgcctgcgccgtcagttgcatgacctgcgcaaaaagcctgacgaggcg
aagctggcgcagtgggtagcgcgggttcaagcctcctgtgcgcaggtgacggcgcggcgt
gagagcgtgccgacgatccgttatgacgacaacctgcccatcgccgccaaacgcgatgag
atcaaggaggccttgctcaagcatcaggtgctgatcattgccggtgaaaccggctccggc
aagaccacccaattgccgaaaatctgcctggaaatcggtcgcggccagcacggtctgatc
ggccatacccagccgcgccggatcgccgcacgcagcgtggccagccgggtggccgatgag
ctgggcacaccgctgggcgcgctggtcggttatcaggtgcgctttgaagatcagagcgac
agcaacacgctgatcaaactgatgaccgacggtattctgctggccgaaacccagcatgat
cgctttcttgagcgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctgaac
atcgacttcctgctgggttacctgaaaaccctgctgccgcgtcgtccggacctgaaagtc
atcatcacctccgcgaccatcgacctgcagcgcttttccgagcacttcaacgatgcgccg
gtgatcgaagtgtccgggcgtaccttccctgtcgacctctggtaccgcccgctgaccagc
gagcaggacgaggaaggcaacagcgtcgaagaagacctgacagtcgatcaggccattctg
gccacgctggatgagctggcgtcctttgagcgtagcgagcgcaagagcccgggcgacgtg
ctggtgtttctgcccggcgaacgcgagattcgcgatgccgccgaggtactgcgcaaggcg
cagctcaggcacaccgaaattctgccgctgtacgcacgcctttcgcctgccgaacagcag
cgtatctttcagtcccatccgggtcgtcgtgtggtgctggccaccaacgtggccgaaacc
tcgctgaccgtgccgggcatccgctatgtgatcgataccggtactgcacgcatcagccgc
tatagctatcgcgccaaggtccagcgcctgccgatcgaagccgtgtcgcaggccagcgcc
aaccagcgcaaaggccgttgcgggcgcgtcgagcccggtttgtgcgtgcgtctgtacagc
gaggaagatttcaacggtcgacctgaattcaccgaccccgagatactgcgcaccaacctg
gcagcggtcatcctgcagatgctgcacctgcgtctgggtgagatcaccgatttcccgttc
atcgagccgccggatggcaaggcgatcagcgacggcttcaacctgttgcaggagctgtcg
gcagtcaatcgcgaaaatcagctgaccccgctgggccgtcaactggcgcgcctgccagtg
gatccgcgcatgggtcgcatgcttctggaagctgcgaagcagggcagcctgcaggaagtc
ttgatcgtggccagtgccatgtctgtgcaggatgtgcgtgagcgtccacccgagcgtcag
caggcggctgatcaggcccatgcgcaatggaaagacgccgactcggacttcgccgggctg
gtcaatctgtggcgcggttttgaagagcagcgccagaccctgacggccagcccgctgcgt
aactggtgccggcgcaattttctgaattacctgcgcctgcgcgagtggcgtgattcccat
cggcagttgagcctgatctgtcgcgatctgcaactgacggtcaacaaggaaccggccgat
tacccgaaatttcacaaggccattctttctggtctgctgagtcagatcgggcaaaaggcc
gacgagggtgactaccttggcgcacggcagcggcgcttctggattcacccgtcttccggg
ctcggcaagaagcgcccgcagtggttgatgaccgctgagctggtggaaaccaccaagctg
tacgcgcgcatggtggccaagatcgattcggactggatcgagccgctggctggccacctg
atcaagaaaaatcatttcgagccgcactgggagaagaagcgcgggcaggtcgtagcgttc
gagcagattacgctgttcggcctgatcgtggttggtcgccgtccggtgcattacgggccg
attgacccggtggtgtcgcgcgagctgttcattcgcgaaggtctggtgcgcggtgacatc
ctgtcgcgggccaaatgcctgagtgccaatacccgcctgctggagcagctcgatgagctg
gaggccaaggctcgacgtcgcgatattctggctgacgaagacaccttgttcagcttctat
gaagcgcgaatcccggccgagattcatcagacggccacgttcgacagttggtacaagact
gaaagccagaagaacccgcaactgctgatcatgcgcgaagaggatgtgctggcccgcgag
gccagtgaagttaccgccgcgcagtatccggataccttgcacctgggcgacctcagtctg
tcgctgagttaccacttcgagcccaaccacccacgtgacggcgtgaccttgcgcgtccct
gcgcccctgttgctgtcgctgcctgccgagcgcctggagtggctggtgccgggcttgctc
gagaccaagagcattgcgctggtgcgcaacctgcccaaagcggtgcgcaagaacttcgtg
ccggtcccggatttcatcaaggccgcgttgcaacgtattaccttcggcgagggctcattg
ccccaggcgctggggcgtgagcttctgcgcatgaccggcgtgcgggtcagcgaagagggc
tgggctgaagccgcgcagcagcttgaaggccacctgaagatgaacctggaaatcgtcgat
ggcagcggcaagtttctcggtgagggtcgtgatctggccgagctgacggcgcgctttgcc
gaggcgagccaggccgcactggccgtacctcaaaccgcgaaaagccagcagccggtgcag
gccaaggcctttgctgcggtggcgcaaaagactcagcagaacatcgccgggttgtcgatg
acggtttatcccgcgttggtcgaagagggcggagcggtcaaggaaggccggttctccacg
caggccgaagctgaatatcagcatcgccgtgctttgcagcgtttgttgctgcaacagctg
gctgaaccggcgaagttcctgcgtaacaaactgccggggcagaccgagctggccttgttg
caccgcgagcttggccgcatcgatgcgttgatagaggacatcctgctggccagcctcgac
agttgcgtgctggaaggtgaagccgagttgccgcgcgacggtgccggcctgttgtcgctg
gctgagcgcaagcgcgccgactggaccgaacacgccgaacggctggcgaagctgacgctg
gagattctcaagctgtggcacggactgcaaaagcgcttcaaaggcaagattgacctgtcg
caggcggttgccctcaacgatatcaaggcgcaactgagcaaactggtgtaccccggtttc
gtgcgtgaaaccccggcggtgtggctcaaggaactgccgcgctacctgaaggctatcgag
atgcgtctggaaaaactgccaggtcaggtgcagaaagaccgggtgtggagcatcgagctg
gcaggcctgtggacgcaataccagacacgtgccgacaagcacgcccaggaaggcaagcgc
gacccggaactggcgctgtatcgctggtggatggaggagtatcgcgtgtcgctgttcgct
cagcagttaggcaccaaaatgccggtgtcggacaaacggttgagcaagcagtggagtcag
gtggagggctga
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