Pseudomonas amygdali: BKM19_023385
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Entry
BKM19_023385 CDS
T05354
Name
(GenBank) DNA repair protein RecO
KO
K03584
DNA repair protein RecO (recombination protein O)
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BKM19_023385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_023385
DNA repair and recombination proteins [BR:
pamg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BKM19_023385
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BKM19_023385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecO_C
RecO_N
Motif
Other DBs
NCBI-ProteinID:
AVB16169
LinkDB
All DBs
Position
complement(4790244..4790927)
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AA seq
227 aa
AA seq
DB search
MSAPTGQPAYVLHSRAYRENSALVDFLTPQGRLRAVLRSAKGKAGSLARPFVPLEVEFRG
RGELKNVGRMESAGVATWMTGEALFSGMYLNELLIRLLPAEDPHPAVFEHYAATLLALAL
GRPLEPLLRSFEWRLLDDLGYGFAMDADINGEPLAIDGMYRLQVDAGLERVYLLQPGLFQ
GAELLAMSEADWSVPGALSAAKRLMRQALAVHLGGRPLVSRELFRKP
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgcccaccggccaacctgcttatgtgctccacagccgtgcgtatcgcgaaaac
agcgcgctggtcgatttcctcacgccccaagggcggctacgtgccgtgctgcgcagtgcc
aaaggcaaggcaggctcgctggcgcgtccgttcgtgccccttgaagtcgagtttcgaggg
cgtggcgaactaaagaatgtcgggcgcatggagagcgcaggcgttgctacctggatgacc
ggcgaggcgctgttcagcggcatgtacctcaacgaactgctgattcgcctgttgcctgcc
gaagatccgcatccagctgtattcgaacattacgccgccacattgctggccctcgcactg
ggccgtccgctggaaccgttgctgcgttcgttcgaatggcggttgctggatgatctgggc
tacggctttgcgatggacgccgacatcaacggcgagccgctggcaattgatggcatgtac
cgcctgcaagtggatgccgggcttgagcgtgtttatctgcttcagcccggcctgtttcaa
ggcgcagaattgctggccatgtccgaagcggactggagcgtccctggtgcgttgtctgct
gccaagcgtctgatgcgtcaggcgctggctgtgcatctgggcggccgcccacttgtcagt
cgtgaactgtttcgcaagccttga
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