Pseudomonas amygdali: BKM19_023395
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Entry
BKM19_023395 CDS
T05354
Name
(GenBank) ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
pamg
Pseudomonas amygdali
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pamg03019
]
BKM19_023395
03009 Ribosome biogenesis [BR:
pamg03009
]
BKM19_023395
03036 Chromosome and associated proteins [BR:
pamg03036
]
BKM19_023395
Enzymes [BR:
pamg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
BKM19_023395
Messenger RNA biogenesis [BR:
pamg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BKM19_023395
Ribosome biogenesis [BR:
pamg03009
]
Eukaryotic type
90S particles
RNase
BKM19_023395
Prokaryotic type
rRNA processing factors
BKM19_023395
Chromosome and associated proteins [BR:
pamg03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
BKM19_023395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
Motif
Other DBs
NCBI-ProteinID:
AVB16171
LinkDB
All DBs
Position
complement(4791883..4792572)
Genome browser
AA seq
229 aa
AA seq
DB search
MSVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFP
QAREGQLSRLRARLVKGETLALLARGFDLGEYLRLGSGELKSGGFRRESILADALEALIG
AIYLDAGMEAARERVLAWLTTEFDSLTLVDTNKDPKTRLQEFLQSRACELPRYEVVDIQG
EPHCRTFFVECEINLLNEKSRGQGVSRRIAEQVAAAAALIALGVENGHE
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtatccttgagccgccttgagcgtcagctcggctataccttcaaggatcaggaa
ctgatggtcctggccctgacccatcgcagttttgccggtcgcaacaacgagcgtctggaa
tttctcggtgatgccattctcaacttcgtggcgggtgaggcgttgttcgaacgcttccct
caggcccgcgaaggccagttgtcgcgcttgcgtgcgcgcctggtgaagggtgaaaccctt
gcgttgctggcccgtggtttcgatctgggcgagtatcttcgcctggggtccggcgagctg
aaaagcggtggtttccgtcgcgagtcgattctcgccgacgcccttgaagcgctgatcggg
gcgatctatctggacgctggcatggaggctgcgcgcgagcgcgttctggcctggctgaca
accgagttcgacagcctgacgctggtagacaccaacaaggaccccaagacccgactgcag
gaatttctccagtcgcgggcctgcgaactgccgcgttacgaggtggtggatatccagggt
gaaccgcattgccggacgtttttcgtcgaatgcgagatcaacctattgaatgaaaaaagc
cgaggacagggtgtcagccgccggattgccgaacaggtagccgcagcagcagcacttatt
gccctgggcgtggagaacggtcatgaatga
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