KEGG   Pseudomonas amygdali: BKM19_023785
Entry
BKM19_023785      CDS       T05354                                 
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
pamg  Pseudomonas amygdali
Pathway
pamg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pamg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    BKM19_023785
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pamg03400]
    BKM19_023785
Enzymes [BR:pamg01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     BKM19_023785
DNA repair and recombination proteins [BR:pamg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     BKM19_023785
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     BKM19_023785
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BKM19_023785
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T
Other DBs
NCBI-ProteinID: AVB16233
UniProt: A0AB35R4K3
LinkDB
Position
complement(4881444..4882874)
AA seq 476 aa
MTSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACVI
TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAR
EWQGGNSRWDLIDVVRAAYALRPDGIVWPEQDGRVTLKLERLTAANGIDHGQAHDALSDV
RATIALARLIREKQPKLYDYLFALRSKQKVQEQIRLMQPLVHISGRFSAARNYLGVVLPL
AWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINRCPV
IAPLGVLRSEDQQRLQLDMAGYQARATQLSESREVWQDKLSVLYGKEDFAASEDPEQQLY
DGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEEQQRWQ
DFCQQRLSDPERGAPNTLKDFATALAECSLSAAPEQLEVLRQWQDYAQALSKRLGV
NT seq 1431 nt   +upstreamnt  +downstreamnt
gtgacttccagcattttctggtacgactacgaaaccaccggcatcaacccgcgcaatgac
cgtgcgctgcagatggccggcatccgcaccgataccgaactcaatgaaatcgcgccgccg
gtcaatcttcattgccagctaagtgacgacattctgccccatcccgttgcctgtgtgatt
accggaataacgccggccacgctggcggaaaaaggcttgtgcgaggcggatttcatgacc
cgcgtacatgccgaactatctgcgccagggacatgtggtgcgggttacaacaccttgcgt
tttgacgatgaagtcacgcgttacagtttttatcgcaacttcttcgacccttatgcacgc
gagtggcagggcggtaacagccgctgggatctgattgatgtcgtgcgcgcggcctatgca
ttacgccccgacggcattgtctggcccgaacaggacggtcgcgtcacactcaagctggaa
cgactgactgctgccaacggcattgatcatggacaggcgcatgatgcgttatccgacgtg
cgtgcaactattgccctggcgcgcctgattcgtgaaaaacagccgaagctttatgactac
ctgttcgcattacgcagtaaacagaaagtccaggagcagattcgtctgatgcagccactg
gtgcatatatcgggacgtttttctgcggcacgcaattaccttggcgtggtgcttccgctg
gcatggcacccgcataaccgcaacgcgctgatcgtctgtgacctgcaccttgacccttca
ccgttgttgcaagacgacgctgaaatactcaagcagcgtttatatacccggcatgaagcg
ctgggggaaggcgaattgccggtgcctctcaaattactgcatataaaccgttgcccggtg
atagcccccctgggggtgctacgcagcgaagatcagcagcggctgcaactggacatggcg
ggctaccaggcacgcgcaacgcagttgagtgaaagccgggaagtttggcaggataaactg
agcgtcctttatggcaaggaagattttgctgcaagtgaggatccagaacagcagttatat
gacggttttatcggtgaccgtgatcgtcgactgtgcgagcaagttcggcaagccgagccc
gaacaactggcacgtgacgcgtggccgtttgatgacgcccgcttgcctgaattgttattc
aggtaccgcgctcgtaactttcctgacaccttgagcagtgaagagcaacagcggtggcag
gacttctgtcagcagcggctgagcgacccggaacggggggcgcccaataccctgaaggac
tttgcgactgcgctggctgaatgctctcttagtgccgcgccagagcagttggaggtattg
cgccaatggcaggattacgcgcaggcgctgagtaaacgtctgggtgtataa

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