Pseudomonas amygdali: BKM19_024590
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Entry
BKM19_024590 CDS
T05354
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKM19_024590 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pamg03019
]
BKM19_024590 (pnp)
03016 Transfer RNA biogenesis [BR:
pamg03016
]
BKM19_024590 (pnp)
Enzymes [BR:
pamg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BKM19_024590 (pnp)
Messenger RNA biogenesis [BR:
pamg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BKM19_024590 (pnp)
Transfer RNA biogenesis [BR:
pamg03016
]
Prokaryotic type
tRNA degradation factors
BKM19_024590 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_2
Motif
Other DBs
NCBI-ProteinID:
AVB16383
UniProt:
A0A0N1JRF1
LinkDB
All DBs
Position
complement(5039039..5041144)
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADAGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKIDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPVWDWQPKPEA
TALLGAIRAEFGDAISQAYTITVKADRYARLGELKDQVVAKLAVEEGSPSASEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPGAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaagtttcagttcggtcaatcgaccgtaaccctcgagacaggc
cgtatcgcccgtcaagcctctggcgcagtattggtcaccgttgacgacgacgtcagcgta
ctcgtgactgtggtcggcgccaaacaggctgacgctggcaaaggcttcttccctctgtcc
gtgcactatcaggaaaaaacctacgctgccggcaagattcctggtggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacctcgcgcctgatcgaccgtccgatccgc
ccgttgtttccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtctccacc
agcaagaaaatcgatccggacatcgctgcgatgatcggtacttcggctgcactggccatc
tccggtattccgttcgacggtccggtcggtgctgcgcgcgttgctttccacgaaagcacc
ggctacctgctgaacccgacttacgagcaactgcaggcttcgagcctggacatggtcgta
gccggtacttccgaagccgttctgatggttgaatccgaagccaaagagctgaccgaagac
cagatgctgggcgctgtgctgttcgcccatgacgaattccaggtggtgatcaacgccatc
aaggaactggctgcagaagccgccaagcctgtctgggactggcagccaaagcctgaagcc
accgcactgctgggcgctatccgtgccgagttcggcgacgcgatctcccaggcttacacc
atcactgtcaaagccgaccgctatgcgcgtctgggcgagctgaaagatcaggtcgttgcc
aagctggctgttgaagaaggcagcccgtctgccagcgaagtcaaagctgctttcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccgcgtatcgatggtcgc
gatactcgtaccgttcgccctctgaatatcgaagtcggcgttctgccgaagactcacggt
tcggcactgttcacccgtggcgaaactcaggcgctggttgttgcaacgctgggtaccgcg
cgcgacgcacagctgctcgacacccttgaaggcgagaaaaaagaccccttcatgctgcac
tacaacttccctccgttctctgtgggcgagtgtggtcgcatgggcggcgcgggccgtcgt
gaaatcggtcacggccgtctggcccgtcgcagcgttcaggccatgctgccaggcgccgac
gtgttcccgtacaccatccgtgtcgtgtcggaaatcaccgagtccaacggttccagctcc
atggcttcggtctgcggcgcttccctggcactgatggacgctggtgttccgatgaaggca
ccggttgccggtatcgccatgggtctggtcaaggaaggcgagaagttcgccattctgacc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtagccggtacctcc
aaaggtgttaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagaaatcatg
gagatcgccttgggtcaggccctggaagctcgcctgaacatcctcggtcagatgaaccag
atcatcggtcagtcgcgtaacgaactgtcggccaacgctccgaccatgatcgcgatgaag
atcgacaccgacaagatccgtgacgtgatcggcaagggtggtgcaaccatccgtgctatc
tgcgaagagaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gagtccaaggaagcggctgaggcagcacgtcagcgcgttctgggcattaccgcagaagcc
gagatcggcaagatctacgtcggtaaggttgagcgcatcgtcgatttcggtgcattcgtc
aacatcctgccgggcaaggacggtctagttcacatctcgatgctgagcgatgctcgcgta
gagaaagtgaccgatatcctcaaggaaggtcaggaagtcgaagtgctggtactggacgtg
gacaaccgcggtcgtatcaagctgtcgatcaaagacgtagcggcagcgaaagcgtcgggc
gtctga
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