Pseudomonas amygdali: BKM19_024605
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Entry
BKM19_024605 CDS
T05354
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pamg
Pseudomonas amygdali
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pamg03016
]
BKM19_024605
Enzymes [BR:
pamg01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
BKM19_024605
Transfer RNA biogenesis [BR:
pamg03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
BKM19_024605
Prokaryotic type
BKM19_024605
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
PUA_3
Motif
Other DBs
NCBI-ProteinID:
AVB16386
LinkDB
All DBs
Position
complement(5041748..5042665)
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AA seq
305 aa
AA seq
DB search
MAQVKRIRRNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFG
EATKFSQYLLDSDKSYETLAQLGKTTTTADSEGEVLLTRPVTVGRDDIEAVLPHFRGQIS
QIPPMYSALKRDGQPLYKLARAGEVVEREPRSVTIARLELLACEGDTARLSVDCSKGTYI
RTLVEDIGEKLGCGAYVAELRRTQAGPFTLAQTVTLEELEQVHADGGNEAVDRFLMPSDS
GLLDWPLLKFSEHSSFYWLHGQPVRAPDAPKFGMVRVQDHEGRFIGIGEVAEDGRIAPRR
LIRSE
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtggctcaggtcaagcgtatacgccgcaatgtcagcgggatcatcctgctcgacaagcca
ctgggtttcacttccaacgccgctttgcaaaaggttcgctggctgctcaatgccgagaaa
gccgggcatacgggcagtcttgatcctctggcaacgggtgttttgccgttgtgctttggc
gaagcgaccaagttttcccagtacctgctcgattcggacaagtcctacgagactctggcg
cagttgggcaagaccaccacgaccgccgactctgagggcgaggttttgctcacgcgtccg
gtgaccgttggtcgcgacgatattgaagcagtgttgccgcattttcgtgggcaaatcagc
cagatacctcccatgtactcggccctcaagcgtgatggccagccactttacaagctggca
cgtgcaggggaagtagtggagcgcgagccccgttctgttactattgcgcgcctggaatta
cttgcttgcgaaggcgacacagcacgtctgtccgtcgattgcagtaaaggcacctatatc
cgtacgctggtcgaggatattggtgaaaagctcggttgtggtgcttacgtcgcagagctg
cgccgtacccaggcggggcctttcacgctggctcagacggttacgctggaagagctggag
caagtgcatgccgacggcggcaatgaggcggttgaccgcttcctgatgccatcggacagc
ggtctgctggactggccgctgctgaagttttcggagcacagttcgttttactggttgcac
gggcagccagtgcgcgcgccggacgcaccgaaattcggtatggttcgcgtgcaggatcac
gaaggtcgcttcatcggtatcggtgaagtcgccgaagacgggcgtattgcgccgcgtcga
ttgattcggtcagagtga
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