Pseudomonas amygdali: BKM19_026345
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Entry
BKM19_026345 CDS
T05354
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pamg
Pseudomonas amygdali
Pathway
pamg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BKM19_026345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pamg03021
]
BKM19_026345
03400 DNA repair and recombination proteins [BR:
pamg03400
]
BKM19_026345
Enzymes [BR:
pamg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BKM19_026345
Transcription machinery [BR:
pamg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BKM19_026345
DNA repair and recombination proteins [BR:
pamg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BKM19_026345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
AVB16695
LinkDB
All DBs
Position
complement(5407211..5408212)
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLSKKGSGVVTAADIQLDHD
VEIVNPDHVIANLASNGVLNMKLTVARGRGYEPADSRQSDEDESRSIGRLQLDSSFSPVR
RIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VIEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgacaccccgccatattgatgtgcaggttgtcagt
ccaacccgcgccaagatcactctcgagcctctcgagcgtggtttcggccataccctgggc
aacgcgcttcgccgcattttgttgtcctccatgcccggctgtgcagtagtcgaggccgag
attgacggtgtactccatgagtacagcgccatcgaaggtgtacaggaagacgtcattgaa
atcctgttgaaccttaaaggtctggctatcaagctgcacggtcgagacgaagttacgctg
accttgtcgaagaagggttcgggggtggttaccgctgccgatattcagctggatcatgat
gtcgagatcgttaaccccgatcacgtaatcgctaacctggcgtctaacggcgtcttgaac
atgaagctcaccgtagctcgtggtcgtggttatgagccggcagactcgcgtcaaagcgat
gaagacgaaagccgcagcattggtcgcttgcagcttgattcttcgttcagcccggttcgc
cgtatcgcatacgtggtggaaaacgcccgtgtcgagcagcgtactaacctggacaagctg
gttattgatctggaaaccaacggtacactggaccctgaagaggctatccgtcgcgctgca
accatcctgcaacagcagctggctgcgttcgtggacctcaaaggcgacagcgaaccagtg
gtaatcgaacaggaagacgagatcgatccgatcctgcttcgtccggttgacgatttggaa
ctgaccgtgcgttcggccaactgccttaaggcggagaacatctactacatcggcgatctg
attcagcgcaccgaagtagagctgttgaagactccgaacctgggcaagaaatccttgacc
gagatcaaggacgttctggcttctcgtggtctctccctcggcatgcgcctcgacaactgg
ccgccggcaagtcttaagaaggacgacaaggctacggcctga
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