Pseudomonas amygdali: BKM19_028715
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Entry
BKM19_028715 CDS
T05354
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
pamg
Pseudomonas amygdali
Pathway
pamg02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
BKM19_028715 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pamg02044
]
BKM19_028715 (tssC)
Secretion system [BR:
pamg02044
]
Type VI secretion system
Imp/Vas secretion system core components
BKM19_028715 (tssC)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
TssC
TSP_NTD
Motif
Other DBs
NCBI-ProteinID:
AVB17098
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All DBs
Position
5877380..5878882
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AA seq
500 aa
AA seq
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MTDKQPVTQQDSALVEVENFAPQSSLLDSIISESRVARSETERTRTRDLIGELVAQVLEG
EMTPSKDLIAVLDARIAEIDSMLSEQMNEIMHAREFQQLEASWRGLKYQVDQTETSTTLK
IHLLNASKKDLVRDLKASSEFDQSALFKKIYEEEYGTFGGAPFGMLLGDYEFNRSPEDMY
LLEEISHVAAAAHAPFISAASAELFGWDSFTDMAGPRDLAKIFDTVEYAKWKSFRASEDS
RYVGLTLPHVLGRLPYGPDTTPVEEFNFVESVDGRDHNKYLWMNAAYALGTRVTDAFSRY
GWCVAIRGVEGGGLVEGLPTHTFKTDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCK
GTDYAAFFGTQSTQKQKQYNTDIANANARLSAQLQYIFATSRIAHYMKAIMRDKIGSFAS
RKDVELFLNKWLSSYVLLDDTASQEAKAKFPLREARAEVFEVPGKPGVYKAVTYLRPHYQ
LDELTASLRLVAELPQSTRG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataagcaacccgtgactcagcaggacagcgctctggttgaagttgaaaacttc
gccccgcaatcctccctgctcgacagcatcatttccgaaagccgcgttgcgcgctcagag
accgagcgcacccgtacccgcgatctgatcggcgaactggtggcccaggtacttgaaggc
gaaatgacgccaagcaaggacctgatcgccgtgctcgacgcgcgcatcgccgagatcgat
tcgatgctctccgagcagatgaacgaaatcatgcacgcccgtgaattccagcaactggaa
gcgtcctggcgcggcctgaaatatcaggttgaccagaccgagaccagcaccacgctgaag
attcacctgctcaatgcgtcgaaaaaagacctcgtgcgtgacctcaaggcctcgtccgaa
ttcgaccagagcgcactgttcaagaagatctacgaagaagagtacggcaccttcggtggt
gcaccgttcggtatgttgctgggtgactacgagttcaaccgcagcccggaagacatgtac
ctgctcgaggagatctcccacgttgcagccgccgcccacgcgccgttcatttccgcggca
tcggctgagttgttcggctgggactcgttcaccgacatggccggccctcgcgacctggcg
aagatcttcgatacggtcgaatacgccaagtggaagtcgttccgcgcctctgaagactcc
cgctatgtcggcctgactctgccgcacgtgctgggtcgcctgccatatggcccggatacc
acgcccgtcgaagaattcaacttcgtcgaaagcgtcgatggccgtgaccacaacaaatac
ctgtggatgaacgctgcctacgcactgggcactcgcgtgaccgatgcattctcccgctac
ggctggtgtgtggcgatccgcggcgtggaaggcggcggtctggtcgaaggcctgccgacc
cacaccttcaagaccgatgacggcgaaatcgcgctgaaatgcccgactgaaattgccatc
accgaccgtcgcgaaaaagagctgtcggacctggggttcattcctctggtgcactgcaaa
ggcaccgactacgccgcattcttcggcactcagtcgacccagaagcagaagcagtacaac
accgacattgccaacgccaacgctcgtctttcggcgcaactgcaatacatcttcgcgacc
tcgcgtatcgctcactacatgaaagcgatcatgcgcgacaagatcggcagtttcgcatcg
cgcaaggatgtcgagttgttcctcaacaagtggctgtccagctacgtgttgctggatgac
accgccagtcaggaagccaaggccaagttcccgttgcgcgaagcgcgtgccgaagtgttt
gaagtgcctggcaagcctggtgtctacaaggccgtgacttacctgcgtccgcattaccaa
ctggatgaactgacagcatcgttgcgtctggtcgccgaattgccgcaatcgactcgcggc
tga
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