Pseudomonas amygdali: BKM19_028735
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Entry
BKM19_028735 CDS
T05354
Symbol
clpV
Name
(GenBank) type VI secretion system ATPase TssH
KO
K11907
type VI secretion system protein VasG
Organism
pamg
Pseudomonas amygdali
Pathway
pamg02025
Biofilm formation - Pseudomonas aeruginosa
pamg03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pamg00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
BKM19_028735 (clpV)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
BKM19_028735 (clpV)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pamg02044
]
BKM19_028735 (clpV)
Secretion system [BR:
pamg02044
]
Type VI secretion system
Imp/Vas secretion system core components
BKM19_028735 (clpV)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
AAA
AAA_5
ClpB_D2-small
AAA_16
AAA_22
Clp_N
nSTAND3
ATPase_2
TniB
AAA_7
Sigma54_activat
Zeta_toxin
AAA_14
NACHT
IstB_IS21
AAA_30
ABC_tran_CTD
AAA_24
SLFN-g3_helicase
RuvB_N
Hpr_kinase_C
MCU
Motif
Other DBs
NCBI-ProteinID:
AVB17102
UniProt:
A0A2G4DBT3
LinkDB
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Position
5882253..5884856
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AA seq
867 aa
AA seq
DB search
MNLKSLFAKLNETSRTATESAAALCLSENHYDVEVEHLLLQLLDNNDNDLPVILRHYDVV
PDRLQAQLVTALGTFKKGNTRTPALSPHITRMIEQAWVLASIEFGQSQIRTGHLIQALLD
DDALRRVVIGSAPELEKINADDLRLNMSALVEGSPETKLSKPLANADASTGATTKGNGKT
PALDQYTVNLTQSARDGRIDPVLGREFEVRQMVDILTRRRQNNPILTGEAGVGKTAVVEG
LALRIVQGDVPSVLKGVAIHTLDLGLLQAGAGVKGEFENRLKSVIEETKRSLHPIILFID
EAHTLIGSGGQAGQNDAANLLKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKV
EEPDEDKAIHMLRGLLAKMQEHHKVTVMDEALVQAVRLSNRYITGRQLPDKAVSVLDTAC
ARVALGQSAQPGALEDCKRHIDNLNAEITVLEQETAKGSDHARRLTALHEELKAEQETRE
SLEQQWKRELELVEKLGALSVPEDGAPDAEQIAAVRAELASVQGEQPLVHALVDGGTIGE
VISGWTGIPLGKMLRDEIDTVQSLPALLGERVLGQDHALEEIGKRIKISRARMEDPNKPI
GVFLLLGPSGVGKTETALALADTLYGGERNVITINMSEYQEAHTVSSLKGSPPGYVGYGE
GGVLTEDVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLDDGEGREINFRNTVIILTS
NTGTDRIMQWCLNTEQKPTPDDIVEGLRDELNQVFKPAFLGRLTIVPYYPVQDAILERIV
GLKLERIRKRFERNHQAVLRYDEALIKAIASRCTEVDSGARNIDNILSKTLMPELAQRVL
ERMAQDKPIQSLTIDLGSDGDFAYTLT
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
gtgaacctgaagtccctgttcgccaagctgaacgaaacgagccgcactgccactgaaagc
gctgctgcgctgtgcctgtcggagaaccactacgacgttgaagtcgagcacttgctgctg
caattgctcgacaacaacgataacgacctgccggtgatcctgcgccactacgacgtagtg
cctgatcgcctgcaagcacagttggtcaccgcgctggggacattcaagaaaggcaacaca
cggacgcctgcgctctcgccgcacatcacgcgcatgatcgagcaggcctgggtactggcg
tcgatcgaattcggtcagtcgcagatccgcaccggccacctgattcaggccttgctggat
gacgatgccctgcgccgcgtggtcatcggttcggcgccggaactggagaaaatcaacgct
gacgacctgcgcctgaatatgagcgcgctggtcgaaggcagcccggagaccaaactgagc
aagcctctggccaacgccgacgcaagcacgggcgcaaccaccaagggcaacggcaagacc
cctgccctggaccagtacaccgtcaacctgacccagagcgcccgcgatggtcgtatcgat
ccggtactgggacgcgagttcgaagtgcggcagatggtcgacatcctgacccgccgccgt
cagaacaacccgatcctgactggtgaagcgggtgtgggtaaaacagccgtggttgaaggt
ctggcgctgcgcatcgtgcagggcgacgtgccttcggtgctcaagggcgtcgccattcac
accctggatctgggcctgttgcaggcaggtgcaggggtcaaaggcgagttcgaaaaccgc
ctcaagtcggtcatcgaagaaaccaagcgcagcctgcacccgatcattctgttcatcgac
gaagcccacacgctgatcggctcgggtggccaggccgggcagaacgacgcagcgaacctg
ctcaagcctgccttggcgcgtggcgagctgcgcaccatcgccgccaccacatgggcagaa
tacaaaaagtatttcgaaaaagacgccgcattggctcgtcgtttccaggtcgtgaaagtc
gaagagcctgacgaagacaaggccatccacatgcttcgtgggctgctggcgaagatgcag
gagcatcacaaggtcaccgtgatggacgaagcgctggtgcaggccgtacgcctttccaat
cgctacatcaccggccgccaattgccggacaaagccgtcagcgtgctggacaccgcttgc
gcacgcgtcgcgctgggccaatcggcacagccaggcgcgctggaagactgcaagcgccac
atcgacaacctgaacgcagaaataaccgtgctcgagcaggaaaccgccaagggcagcgac
cacgctcgccgtttgacggccctgcacgaagagctgaaagccgaacaggaaacccgcgag
tcgctggagcaacagtggaagcgcgagctggaactggtcgaaaagcttggcgcactcagc
gttccggaagacggcgcgcctgatgctgagcagatcgctgcagtgcgtgccgaactggcc
agtgtgcagggcgagcaaccgctggtccacgcgctggtagacggcggcaccatcggtgaa
gtgatttccggctggaccggtatcccgctgggcaagatgctgcgcgacgagatcgatacc
gtacaaagtctgccagcgctgttgggtgaacgcgtgctggggcaggatcatgcgcttgaa
gagatcggcaagcgcatcaagatttcccgcgcgcgcatggaagacccgaacaagccgatc
ggtgtgttcctgctgctcggcccgagcggtgtcggcaagaccgaaactgcgctggcgctg
gctgacacactgtatggcggcgagcgtaacgtcatcaccatcaacatgtccgaataccag
gaagcccacacagtctccagcctcaaaggttccccgccgggctacgtcggttatggcgaa
ggtggcgtgctgaccgaagacgtgcgccgcaagccttacagcgtggtgctgctcgacgag
gtggagaaagcccacccggacgtgctcgagctgtttttccaggtctttgacaaaggcgtg
ctggacgatggcgaaggtcgcgagatcaacttccgcaataccgtgatcattctcacctcc
aacaccggtactgatcgcatcatgcagtggtgcctgaacaccgagcagaagccgaccccc
gatgacatcgtggaaggcctgcgcgatgagctgaatcaggtgttcaaaccggcgttccta
ggtcgcttgaccatcgtgccgtactacccggttcaagacgcgattctggaacgcatcgtc
ggcctgaaacttgagcgcatccgcaagcgtttcgagcgcaatcaccaggcagtgctgcgt
tacgacgaggcgctgatcaaggccatcgcatcgcgttgcacggaagtcgacagcggcgca
cgcaacatcgacaacatcctgtccaaaaccctcatgccggaactcgcccagcgagtgctg
gagcggatggcgcaggacaagccgattcagagcctgaccatcgatctgggcagcgatggc
gacttcgcttacacactgacctga
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