Paracoccus aminophilus: JCM7686_0943
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Entry
JCM7686_0943 CDS
T02792
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pami
Paracoccus aminophilus
Pathway
pami03420
Nucleotide excision repair
pami03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JCM7686_0943
03430 Mismatch repair
JCM7686_0943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pami03400
]
JCM7686_0943
Enzymes [BR:
pami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JCM7686_0943
DNA repair and recombination proteins [BR:
pami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JCM7686_0943
MMR (mismatch excision repair)
Other MMR factors
JCM7686_0943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
AAA_11
DEAD
PcrA_UvrD_tudor
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
AGT08052
UniProt:
S5XSH2
LinkDB
All DBs
Position
904959..907346
Genome browser
AA seq
795 aa
AA seq
DB search
MSQYDDFDPFEAAAAPVPLSQRAMGVRPTPYLDGLNPAQRAAVEELDGPVLLLAGAGTGK
TRALTTRIAHLLMQGKARHGQILAVTFTNKAAREMKDRIARLLGETVEGMPWLGTFHSVS
VKILRRHAELIGNADLHLKTTFTILDTDDQIRLLKQLIAAENIDEKRWPARMLAGLIDAW
KNRALTPSRVPKSDARAYDGYGVKLYQAYQDRLLALNAVDFGDLLMHCVTLFQAHPDILR
QWQERFRYILVDEYQDTNTAQYLWLRLLAQAHHNICVVGDDDQSIYGWRGAEVGNILRFE
SDFPGAKVIRLEQNYRSTPHILAAASRLIAANSGRLGKTLWTEAEGGERVRLIGHWDSEA
EARWIGEEIEAFHGGHRAAIGKRSLNDIAILVRASHQMRAFEDRFMTIGLPYRVIGGPRF
YERQEIRDAMAYFRLAVSPDDDLAFERIVNVPKRGLGDKAVQKVQIEARDRGLPLLLGAA
AAVASGAVGGKGGGALRLLTEQLGRWHADAIDSTVSHVELAERILDESGYTAMWQNDKSP
DAPGRLDNLKELVKALEEFENLQGFLEHVALVMDTDKQESAEQVSIMTLHGAKGLEYPIV
FLPGWEDGLFPSQRSMDESGTRGLEEERRLAYVGITRAEELATISFAGNRRMYGQWQSSL
PSRFIDELPEDHVDVLTPPGLYGGGYGAAAQPYGQSSIYDRASKADVYNSPGWKRMQERS
SHHAAPVHKKPVTIDADPAAGFTVGEEVFHQKFGKGRIMGIAEDTLTVEFGTGFKTIKAA
YVQPLSAAGSDDVPF
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgagccagtatgacgatttcgatcctttcgaggcggccgcggcccccgtccctctgtcc
cagcgggcgatgggcgtgcggccgacgccctatcttgacggtctgaacccggcgcagcgt
gcggcggtcgaagagcttgacggccccgtcctgctgcttgccggggcagggaccggcaag
acccgggcgctgacgacgcggatcgcgcatctgctgatgcagggcaaggcgcggcatggc
cagattctcgcggtgaccttcaccaacaaggccgcgcgcgagatgaaggaccgtatcgcc
cggcttctgggcgaaaccgtcgaggggatgccctggcttggcacctttcactcggtctcg
gtcaagatcctgcgccgccatgccgagctgatcggcaatgccgacctgcatctgaagacg
accttcaccattctcgacaccgacgatcagatccggctgctgaagcagctgatcgcggcg
gaaaacatcgacgagaaacgctggcccgcgcgaatgctcgccgggctgatcgacgcgtgg
aagaaccgcgcgctgacgccgtcgcgcgtgccgaaaagcgatgcccgcgcctatgacggc
tatggggtgaagctctatcaggcttatcaggaccgcttgctcgcgctgaacgccgtcgat
ttcggcgatctcttgatgcattgcgtgacgttgttccaggcccatcccgacattctgcgc
cagtggcaggagcgcttccgctatatccttgtcgacgaatatcaggacaccaacaccgcg
caatatctctggctgcggctgctcgcacaggcccatcacaacatctgcgtcgtgggcgat
gatgaccagtcgatctatggttggcgcggcgccgaggtcggcaacatcctgcgctttgaa
agcgatttccccggcgccaaggttatccggcttgaacagaactatcgctcgaccccgcat
atcctcgcggcggcctcgcggctgattgcggccaattcggggcggcttggcaagacgctc
tggaccgaggccgagggcggcgagagggtgcggctgatcggccattgggacagcgaggcc
gaggcgcgctggatcggtgaggagatcgaggccttccacggcggccaccgcgccgccatc
ggcaagcgcagcctcaatgacatcgcgatcctcgtgcgcgccagccatcagatgcgcgcc
tttgaagaccgcttcatgaccatcggtctgccctatcgcgtgatcggcggcccgcgcttc
tatgagcggcaagagatccgcgatgccatggcctatttccggctggcggtttcgcccgac
gacgatctggctttcgagcggatcgtgaacgttcccaagcgcggcttgggcgacaaggcg
gtgcagaaggtccagatcgaggcgcgtgaccgcggcctgccgcttctgctgggtgctgcg
gcggcggtggcctcgggcgcggtcggcggcaagggcggcggcgccttgcgcctgctgacc
gagcagctggggcgctggcacgccgatgcgatcgattcgaccgtgtcccatgtcgagttg
gccgagcggatcttggacgaatcgggctatacggcgatgtggcagaacgacaaatcgccc
gatgcgccggggcggctcgacaacctcaaggaattggtcaaggcgctcgaggaattcgag
aacctgcaaggcttcctcgaacatgtcgcgctggtcatggacaccgacaaacaggaatcg
gctgagcaggtctcgatcatgacgctgcatggcgccaagggcctcgaatatcccatcgtc
ttcctgccgggctgggaggatggcctgtttcctagccagcgcagcatggacgaaagcggc
acccgcgggctcgaggaagagcggcggctggcctatgtcggcatcacccgcgccgaggag
ctcgcgacgatcagctttgccggaaaccggcggatgtatggccaatggcaaagctcgctg
ccctcccgcttcattgacgagctgcccgaggatcacgtcgatgtcctgaccccgcccggc
ctttacggcggcggctatggcgcggcggcgcagccctatgggcaatcctcgatctacgac
cgagcgtccaaggccgatgtctataattctccgggctggaagcggatgcaggagcgcagc
agccatcacgcggccccggttcacaaaaagcccgtgaccattgatgccgatccggcggcg
ggttttacggtgggtgaagaggtcttccatcagaaattcggcaagggccggatcatgggg
attgccgaggatacgctgaccgtcgaattcggcaccggcttcaagaccatcaaggcggct
tatgtccagcctctgagcgcggctggcagcgacgacgtgcccttctga
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