Paracoccus aminophilus: JCM7686_1078
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Entry
JCM7686_1078 CDS
T02792
Name
(GenBank) single-stranded-DNA-specific exonuclease RecF
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pami
Paracoccus aminophilus
Pathway
pami03410
Base excision repair
pami03430
Mismatch repair
pami03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JCM7686_1078
03430 Mismatch repair
JCM7686_1078
03440 Homologous recombination
JCM7686_1078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pami03400
]
JCM7686_1078
DNA repair and recombination proteins [BR:
pami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JCM7686_1078
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JCM7686_1078
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JCM7686_1078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
AGT08187
UniProt:
S5XST2
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All DBs
Position
complement(1058348..1060204)
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AA seq
618 aa
AA seq
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MSQGMPPFSCGFRAAVRAPKPPGLQACRDWRRNPSMSAFLNVENSLTGRRWLSPDPALER
AAEALAQESALPLPIARVLASREVTAADAQGYLEPKLRDLLPNPLRLRDMAPAAERIVAA
ANSGQRVAIFADYDVDGGSSAALLIDWFRAQGRETTLYIPDRIDEGYGPNAPAISQLASA
HDLIICVDCGTLSHDALAAAKDTDVIVLDHHQGGETLPPALAVVNPNRQDEDGSLGHLCA
AGVVFLTLVQANKLLRESGRAQPDLIAMLDLVALATVADVAPLIGVNRAFVRQGLVVMAR
RERVGLSALSDVARLDSAPSAFHLGFLLGPRINAGGRVGRADLGALCLSTTDPRRAEALA
KQLDELNRDRRAIEAAVRDEALAQVEAHLAAAPGPLAWAAGEGWHPGVVGIVAARVKEAV
NLPSVVIGVERGIGKGSARSVPGVDLGRAIQRLASEGLLIKGGGHAMAAGLTVAEELIPQ
AMARLAELLSREMAERSGVNDLRISGLLDPQGASVEMMHLLERAGPFGQAAPAPRFAFAE
QLVENVTTMGDSHLRLRFRSPGSQPVEAVAWGAMNGPLGPGMLGAKGRRFHLAGKLELSL
WGGKERVRLRLDDAAEVA
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagggcatgccgcctttttcatgcggctttcgtgcggcggtccgcgcccccaag
ccgccgggcttgcaagcctgccgcgactggcgcagaaacccaagcatgagcgcttttctg
aatgtcgaaaactccctgaccggccgccgctggctttcccctgaccctgcgctcgagcgc
gcggctgaggccttggcgcaagagtccgccctgcccttgccaatcgcccgtgtgctggcc
tcgcgcgaggtcactgccgccgatgcgcagggctatctagagcccaaattgcgcgatctg
ctgcccaatccgctgcgcctgcgcgatatggcgcccgcggccgagcgtattgtcgcggcg
gcgaacagcggccagcgcgtcgcgatctttgctgattacgatgtcgatggcggttcttcg
gcggcgctgctgatcgactggttccgcgcgcaggggcgcgagaccacgctttatattccc
gaccggattgacgagggctatggcccgaatgcgcccgcgatcagccagctcgccagtgcc
catgatctgatcatctgcgtcgattgtggcacgctgagccatgacgccttagcggcggcc
aaggacaccgatgtgattgtgctcgaccaccatcagggtggcgaaaccctgcccccggcg
ctggccgtggtgaacccgaaccggcaggatgaagacggctccttgggccatctttgtgcg
gcgggcgtggtctttctgacgctggttcaggcgaacaagcttctgcgcgaatccgggcgc
gcccagcccgatctgatcgcgatgctcgatctggtcgccttggcgactgtggccgatgtc
gcgccgctgattggcgtcaaccgcgcctttgtccggcaggggctagtggtcatggcccgg
cgcgagcgtgtcggcctctcggcgctttcggatgtcgcgcggcttgattcggcgccgagc
gcctttcatctcggctttctcctcgggccgcgcatcaatgccggtggccgggtcggtcgg
gccgatctgggcgcgctttgcctttccaccaccgatccgcgccgcgccgaggccttggcc
aagcagctcgatgagctcaaccgcgaccgccgcgccattgaggccgctgtccgcgacgag
gctctggctcaggtcgaggctcatcttgccgccgcgcccggcccgctcgcctgggcggcg
ggcgagggttggcatcccggcgttgtcggcattgtcgcagcgcgggtgaaagaggcggtg
aacctgccctcggtcgtcatcggcgtcgagcgcggtatcggcaagggctcggcccgctcg
gtgccgggcgtcgatctcggccgtgcgatccagcgccttgccagcgagggcctgctgatc
aagggcggcggacatgccatggcggccgggctgaccgtcgccgaagagctgatcccgcag
gcgatggcgcgtctcgccgagctcttgtcgcgcgaaatggccgagcgctcgggcgtcaat
gatctgcggatctcgggccttttggatccgcagggtgcctcggtcgagatgatgcatctg
ctcgaacgcgctggccccttcgggcaggccgctcccgccccgcgctttgcctttgccgag
cagctggtcgagaacgtcaccacgatgggcgacagccacctgcgcctgcgcttccgcagc
cccggctcgcagccggtcgaggccgtcgcctggggcgcgatgaacgggccgcttggcccc
gggatgctgggcgccaaggggcggcgcttccatctggcgggcaagctcgaactttcgctt
tggggcggcaaagagcgcgtgcggctgcgtctcgacgatgccgccgaagtggcatga
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