Paracoccus aminophilus: JCM7686_1103
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Entry
JCM7686_1103 CDS
T02792
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pami
Paracoccus aminophilus
Pathway
pami03030
DNA replication
pami03410
Base excision repair
pami03420
Nucleotide excision repair
pami03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JCM7686_1103
03410 Base excision repair
JCM7686_1103
03420 Nucleotide excision repair
JCM7686_1103
03440 Homologous recombination
JCM7686_1103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pami03032
]
JCM7686_1103
03400 DNA repair and recombination proteins [BR:
pami03400
]
JCM7686_1103
Enzymes [BR:
pami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JCM7686_1103
DNA replication proteins [BR:
pami03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JCM7686_1103
DNA repair and recombination proteins [BR:
pami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
JCM7686_1103
NER (nucleotide excision repair)
GGR (global genome repair) factors
JCM7686_1103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AGT08212
UniProt:
S5XSV3
LinkDB
All DBs
Position
1083633..1086461
Genome browser
AA seq
942 aa
AA seq
DB search
MTQSNDAPAKFGKGSHLHLIDGSAFIFRAYHALPPLTRKSDGTPIGAVAGFCNMLWKYIQ
DSSGADAPTHAAVIFDHSSKTFRNEIYPEYKANRPELPEDLRPQFPLTREATRAFNIACI
EQQDYEADDIIATLACQARAAGGTATIISSDKDLMQLIGDGVDMMDPMKNKPIGPDEVFE
KFGVTPDKVVDIQALAGDSVDNVPGAPGIGIKTAALLINEYGDLETLLARAGEIKQPKRR
QVLQDNAELIRISKRLVQLDCNTPVEFTLESLEVQEPNHEALLDFLSRMEFRTLTNRVAD
RFGKEAPAVTVSTPAAVTAPAGSVELPPINREAYVTIRDAATLKDWLAEIATLGAVAVDT
ETSGLDEMEADLVGVSLSTGPGRAAYLPLGHVDGAADLFGSGDLAPGQMALAEALALLKP
MLEDPATLKIGQNVKYDWKIFARHGIRMTPVEDTMLMSFALNAGGGIGHGMDALAEAHLG
HQTIPIKELIGSGKSQITFAQVPIDKAAPYAGEDAEVTWRLWHFFRPQLGPNAVTTAYRT
LEVPMIPVLADMEMAGVKVDTDHLARMSNAFAQKMAQLEDEIHGLAGEKFNVGSPKQLGE
ILFDKMSLQGGKQGKTGAYSTSADVLEDLAAEGHELPGRVLDWRQISKLKSTYTDALQTH
VNKETGRVHTSYSITGAQTGRLASTDPNLQNIPVRTDEGRRIREAFIAPAGHKIVSLDYS
QIELRILAHVADIPALKQAFRDGIDIHAMTASQMFGVPVDGMDPMIRRRAKAINFGVIYG
ISGFGLARNLRIPRAEAQAFIDTYFERFPEIRAYMDRTVEDAKRDGYVRTLFGRRIMTPG
INQSGPAAGGARRAAINAPIQGAAADIIRRAMIRMPEAIRGIPARMLLQVHDELVFEVED
GAVDQLITAARAIMENSPDPAVKLSVPLVVDAGQGANWAAAH
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgacccagagcaatgacgcccccgccaaattcggcaagggcagccaccttcatctgatc
gatggctcggcctttatcttccgcgcctatcacgcgctgccgccgctgacgcgcaaatcc
gacggcacgccgatcggggcggtggcggggttctgcaatatgctgtggaaatacatccag
gacagcagcggcgccgatgccccgacccatgcggcggtgatctttgaccattcctcgaag
accttccgcaacgagatctatcccgaatataaagccaaccgccccgagctgcccgaggat
ctgcgcccgcaattcccgctgacgcgcgaggcgacccgcgccttcaatatcgcctgtatc
gagcagcaggattacgaggccgacgacattatcgcgacgctcgcctgtcaggcccgcgcg
gcaggcggcacggccacgatcatcagctcggacaaggatctgatgcagctgatcggcgac
ggcgtcgatatgatggacccgatgaagaacaagcccatcggccccgatgaggtctttgag
aaattcggcgtcactcccgacaaggtcgtggatattcaggcgcttgcgggcgattccgtt
gacaacgtgccgggcgcgccggggatcgggatcaagacggcggcgctcttgatcaacgaa
tatggcgatctcgagacgctgcttgcccgcgcaggcgagatcaagcagcccaagcgccgt
caggtgctgcaagacaatgccgagctgatccgcatctcgaagcggctggttcagctcgat
tgcaacacgccggtggaattcaccctcgagagccttgaggtgcaggagcccaaccacgag
gctttgctcgatttcctgtcgcggatggagttccgcaccctgaccaatcgcgtggccgac
cgcttcggcaaagaggctccggcggtcacagtctcgacgcccgccgcggtgactgcgcct
gcgggctcggtcgagctgcctccgatcaaccgcgaggcctatgtcaccattcgcgacgcg
gcgacgctcaaggactggctggccgaaatcgcgacgcttggcgcggttgccgtcgatacc
gagacctcggggctggacgagatggaggccgatctcgtcggcgtctcgctctcgaccggg
ccggggcgcgcggcctatctgccgcttggccatgtcgatggagcggccgatcttttcggc
tcgggcgatctggcgccggggcagatggccctggccgaggcgctcgcgctgctgaagccg
atgctggaagacccggcgacgctgaagatcggccaaaacgtcaaatacgactggaagatc
tttgcccgccacggcatccgcatgaccccagtcgaggacacgatgctgatgtccttcgcg
ctgaacgcggggggcggcattggccacggcatggacgctttggccgaggcgcatcttggt
catcagaccattccgatcaaggagctgatcggctcgggcaaatcgcagatcaccttcgcg
caggtgccgatcgacaaggccgcgccctatgcgggcgaggatgccgaggtgacctggcgg
ctttggcatttcttccggccccagcttggcccgaatgcggtcacgaccgcttatcgcacg
ctggaagtgccgatgatcccggttctcgccgatatggaaatggcaggcgtcaaggtcgat
accgaccatctcgcgcgcatgtcgaatgcctttgcccagaaaatggcccagctcgaggat
gagatccacgggcttgcgggcgagaagttcaacgtgggctcgccgaagcaattgggcgag
atcctctttgacaagatgagcctgcagggcggcaaacagggcaagaccggcgcttattcg
accagcgccgacgtgcttgaagatctcgccgccgaaggccacgagctgcccggccgcgtg
ctcgactggcgccagatctcgaagctcaaatcgacctataccgatgcgctccagacccat
gtcaacaaagagacgggtcgcgtacacacttcttattcgatcaccggtgcgcagaccggg
cgtctggcctcgaccgatccgaacctgcaaaacatccccgtgcgcaccgatgagggccgc
cgcatccgcgaggcctttattgcgcctgcgggccataagatcgtcagcctcgactatagc
cagatcgaactgcgcattctcgcccatgtcgcggatattcccgcgctgaaacaggcgttt
cgcgatgggatcgacattcacgccatgaccgcgagccagatgttcggcgtcccggtcgat
ggcatggatccgatgatccgtcgccgcgcgaaagcgatcaactttggcgtcatctatggg
atttcgggctttggtctggcgcggaacctgcgcattccgcgtgccgaggcgcaggccttc
atcgacacctatttcgagcgtttcccggaaattcgcgcctatatggaccgcacggtcgag
gatgccaaacgcgacggctatgtccgcacgctctttggccgccggatcatgacgccgggg
atcaaccagtcagggcccgccgccgggggcgcacgccgcgccgcgatcaacgcgccgatc
caaggggcggcggcggatatcatccgtcgcgcgatgatccggatgcccgaggcgatccgc
ggcattcccgcgcggatgctgttgcaggtccatgatgaattggtcttcgaggtcgaggac
ggcgcggtcgatcagctgatcactgctgcgcgcgcgatcatggaaaactcgcccgatccg
gcggtgaagctgtcagtgcctctggtggttgacgcggggcagggcgcgaattgggcggct
gcccattga
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