Paracoccus aminophilus: JCM7686_3013
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Entry
JCM7686_3013 CDS
T02792
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pami
Paracoccus aminophilus
Brite
KEGG Orthology (KO) [BR:
pami00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pami03016
]
JCM7686_3013
Enzymes [BR:
pami01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JCM7686_3013
Transfer RNA biogenesis [BR:
pami03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JCM7686_3013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AGT10049
UniProt:
S5XRM6
LinkDB
All DBs
Position
complement(3111098..3111712)
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AA seq
204 aa
AA seq
DB search
MSITLHQNDLPDHLDLGSVVAIDTETMGLDPRRDRLCLVQLSAGDGSAHLVQIARGQREA
PNLVRLLQDPAVLKLFHFGRFDIAALENAFGVRTAPVWCTKIASKLIRTYTDRQGLKYLL
SELCGIDISKQQQTSDWGAALLSDAQRDYAASDVLYLHGLKAELEKRLEREGRSALAQSC
FDFLPTRAHLDLLGWGDEKDIFHH
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgagcattactctccatcaaaacgacctgccggatcatctggatcttggatccgtggtc
gcgatcgataccgagacgatgggccttgatccgcgccgtgaccggctgtgccttgtccag
ctttcggccggagacggttcggcccatttggtccagatcgcgcgcggtcagcgtgaggct
ccgaatctggtgcggctgttgcaagatcctgccgtgctcaagctcttccacttcgggcgc
ttcgatattgccgcgctggaaaatgcatttggcgtccgcaccgctccggtctggtgcacc
aagatcgcctcgaagctgatccgaacctataccgaccggcaggggctgaaatatctgctg
tccgagctttgcggcatcgacatttccaagcagcagcagaccagcgattggggcgcggcc
ctgctcagcgatgcgcagcgcgactatgccgcctcggatgtgctttaccttcacggcctg
aaagccgaacttgaaaagcggctcgagcgtgagggccgcagcgccttggcgcaatcctgc
tttgatttcctgcccacccgcgcccatctcgatcttctgggctggggggatgaaaaagac
atcttccaccattag
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