Paracoccus aminovorans: JCM7685_0601
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Entry
JCM7685_0601 CDS
T05468
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pamn
Paracoccus aminovorans
Pathway
pamn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pamn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JCM7685_0601 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pamn03021
]
JCM7685_0601 (rpoC)
03400 DNA repair and recombination proteins [BR:
pamn03400
]
JCM7685_0601 (rpoC)
Enzymes [BR:
pamn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JCM7685_0601 (rpoC)
Transcription machinery [BR:
pamn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JCM7685_0601 (rpoC)
DNA repair and recombination proteins [BR:
pamn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JCM7685_0601 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
CQR85184
LinkDB
All DBs
Position
I:594551..598756
Genome browser
AA seq
1401 aa
AA seq
DB search
MNQELATNPLNPLAAPRQFDEIKISLASPEEILAWSYGEVKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGLVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLSYGQLLTEEEFLDAQDQYGADAFT
ANIGAEAIREMLANIDLAATAEQLREELKEATGELKPKKIIKRLKIVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGNNKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYTTMEREGMKGEGMVFANLEEVEHAL
ASGSVHLHARITARLPQIDENGNEVIKRYETTPGRLRLGSLLPKNAKAPFELVNRLLRKK
DIQNVIDTVYRYCGQKESVIFCDQIMGLGFREAFRAGISFGKDDMVVPPTKWELVEETQD
QVKSFEQQYLDGLITQGEKYNKVVDAWSKCNDKVTDAMMKTISATKKDEKGAELEPNSVY
MMAHSGARGSVSQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIIREHDCGTDRAITASAAVNDGEVVSPLSERVLGRV
AADDVLVPGEDVVIVRKNELIDERKADEIEQAGVASVRIRSALTCESDDGICALCYGRDL
ARGTLVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFIAAAQDGTIAFENES
TLENANGELIVMSRNMQLHIKSATGETLASHKLFYGSKLFVRDGDAVARGQKMFEWDPYT
LPIIAEKAGVAKYVDLLSGISVRDETDDATGMTQKIVTDWRSAPKGNELKPEIIIVDADG
EPVRNENGNPVTYPMSVDAILSVEDGQEIKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAELDGYVRFGKDYKNKRRIAIEPADDTLAPVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILRIMGIEALADYLIDEVQDVYRLQGVKINDKHIEVIVRQMLQKIE
ILDSGDTTLLKGEHIDREEFEEENAKIEAKGGRPAVGEPVLLGITKASLQTRSFISAASF
QETTRVLTEAAVQGKRDKLVGLKENVIVGRLIPAGTGGATARVKRIASERDNEVIEARRA
EAEATAALIAPEETSVEQAGE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaacttgccaccaatcccctgaacccgctggctgcgccgcggcagttcgac
gaaatcaagatctcgctggcctcgcccgaggaaatcctcgcctggtcctatggcgaggtg
aagaagcccgagaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgc
gcgcgcatctttggcccgatcaaggattacgaatgcctgtgcggcaaatacaagcgcatg
aaatatcgcggcctggtctgcgagaaatgcggcgtcgaggtgacgctgcaaaaggtccgg
cgcgagcgcatgggccatatcgagctggccgccccggtcgcgcatatctggttcctgaag
tcgctgccctcgcgcatcggcctgatgctggacatgacgctgcgcgatcttgagcgcatc
ctctatttcgaaaactacgtcgtgatcgaaccgggtctgaccgacctgtcctatgggcag
ctgctgaccgaggaggaattcctcgacgcgcaggaccagtatggcgccgacgccttcacc
gccaatattggcgccgaggcgatccgcgagatgctggcgaacatcgacctggccgccacc
gccgagcaactccgcgaggagctgaaagaggcgaccggcgagttgaagcccaagaagatc
atcaagcggctgaagatcgtcgaatcgttcctcgagtcgggcaaccggcccgagtggatg
gtgctgaccgtcattccggtcattccgccggaactgcgtccgctggtgccgctggacggg
ggccggttcgcgacctcggacctgaacgacctttatcgccgggtcatcaaccgcaacaac
cgcctgaagcggctgatcgaattgcgcgcgcccgacatcatcgtccgcaacgaaaagcgg
atgctgcaggaatcggtcgatgcgctgttcgacaacggtcgccgcggccgggtcatcacc
ggcaacaacaagcgtccgctgaaatcgctgtcggacatgctgaagggcaagcagggccgc
ttccgccagaaccttctggggaaacgggtcgacttctcgggccgttcggtgatcgtgacc
gggccggagctgaagctgcaccaatgcgggctgccgaagaagatggcgctcgaactgttc
aagccgttcatctattcgcggcttgaggcgaaggggctttcgtccaccgtcaagcaggcc
aagaagctggtcgagaaggaacgccccgaggtctgggacatcctggacgaggtgatccgc
gagcatccggtgctgctgaaccgcgcgccgacgctgcaccgcctgggcatccaggcgttc
gagccgatcctgatcgagggcaaggcaatccagctgcacccgctggtctgctcggccttc
aacgccgacttcgacggcgaccagatggcggttcacgtcccgctgagccttgaggcccag
ttggaagcgcgcgtcctgatgatgtccacgaacaacgtgctgtcgcccgccaacggcgcg
ccgatcatcgtgccgtcgcaggacatggttctgggtctgtattacacgaccatggagcgc
gagggcatgaagggcgaaggcatggtcttcgcgaacctggaagaggtcgagcacgctctg
gcctcgggttccgtgcatctgcacgcccgcatcactgcccgcctgccgcagatcgacgag
aacggcaacgaggtcatcaagcgctatgagaccacgccgggccgtctgcgcctgggctcg
ctcttgccgaagaacgccaaggcgcccttcgagctggtgaaccgcctgctgcgcaagaag
gacatccagaacgtcatcgacaccgtctatcgctactgcggccagaaagaatcggtgatc
ttctgcgaccagatcatgggtctgggcttccgcgaggccttccgcgccggcatctcgttc
ggcaaggacgacatggtggtgccgccgacgaaatgggaactggtcgaggaaacccaggac
caggtgaagtccttcgagcagcaatatctcgacggcctgatcacccagggcgagaagtac
aacaaggtcgtggacgcctggtcgaagtgcaacgacaaggtcaccgacgcgatgatgaag
accatctcggccaccaagaaggacgagaagggtgcggagcttgagccgaactcggtctac
atgatggcgcactcgggcgcccggggctcggtcagccagatgaagcagctgggcgggatg
cgcggcttgatggccaagccgaacggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgacccacggcgcccggaagggtctg
tcggacaccgcgttgaagacggcgaactcgggctatctgacgcgtcgtctggtcgacgtg
gcgcaggactgcatcatccgcgagcatgactgcgggaccgaccgcgcgatcaccgcctcg
gcggcggtcaacgatggcgaggtggtcagcccgctgagcgagcgcgttctgggccgtgtc
gcggccgacgacgtgctggtgccgggcgaggatgtcgtgatcgttcgcaagaacgaactc
atcgacgaacgcaaggccgacgagatcgagcaggccggcgtggcctcggtgcgcatccgc
tcggccctgacctgcgagtcggacgacggcatctgcgcgctctgctatggccgcgacctg
gcgcgcggcacgctggtgaacatcggcgaggcggtgggcatcatcgcggcgcagtcgatc
ggcgagccgggcacgcagctgacgatgcgcaccttccacatcggcggcatcgcccagggt
ggccagcagtccttcatcgcggcggcgcaggacggcaccatcgcgttcgagaacgaaagc
acgctggaaaacgccaatggcgagctgatcgtgatgagccgcaacatgcagctgcacatc
aagtcggccaccggcgagaccctggccagccacaagctgttctacggctcgaaactgttc
gtgcgcgacggtgatgccgtggcccgcggccagaagatgttcgaatgggacccctatacc
ctgccgatcatcgcagagaaggccggcgtcgcgaaatatgtcgacctgctgtcggggatc
tcggtccgcgacgagaccgacgacgcgaccggcatgacgcagaagatcgtgacggactgg
cgctcggccccgaaaggcaacgagctgaagcccgagatcatcatcgtcgatgccgatggc
gagccggtgcgcaacgagaacggcaacccggtcacctatccgatgtcggtcgacgcgatt
ctgtcggtcgaggacgggcaggagatcaaggccggcgacgtggtggcgcggatcccgcgc
gaaggcgccaagaccaaggacatcaccgggggtctgccccgcgtggcggaactgttcgag
gcccgtcgtcccaaggatcacgcgatcatcgccgagctggatggctatgtgcgcttcggc
aaggactacaagaacaagcgccgcatcgccatcgagcccgccgacgacacgctggctccg
gtcgaatacatggtgccgaaaggcaagcacatcccggtgcaggaaggcgacttcgtgcag
aagggcgactacatcatggacggcaacccggcgccgcatgacatcctgcgcatcatggga
atcgaggctctggccgactatctcatcgacgaggtgcaggacgtgtatcgactgcagggc
gtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagatcgag
atcctggattcgggcgacaccacgcttctgaagggcgagcacatcgaccgcgaggaattc
gaggaagagaacgccaagatcgaagccaagggcggccgtccggccgtgggcgagccggtg
ctgctgggcatcaccaaggcgagcttgcagacccgcagcttcatctcggccgcctcgttc
caggagaccacgcgggtgctgaccgaagccgccgtgcagggcaagcgcgacaagctggtg
ggcctcaaggagaacgtcatcgtcggccggctgatcccggccggcaccggcggcgccacc
gcccgcgtcaagcgcatcgccagcgagcgcgacaacgaggtgatcgaggcccgccgcgcc
gaggccgaagccaccgccgcgctgatcgcgccggaggaaacctcggtggagcaggcgggc
gagtga
DBGET
integrated database retrieval system
