Paracoccus aminovorans: JCM7685_1922
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Entry
JCM7685_1922 CDS
T05468
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pamn
Paracoccus aminovorans
Pathway
pamn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pamn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JCM7685_1922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamn03400
]
JCM7685_1922
Enzymes [BR:
pamn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JCM7685_1922
DNA repair and recombination proteins [BR:
pamn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JCM7685_1922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_30
MFD_D3
Cas3-like_C_2
UB2H
AAA_16
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
CQR86485
LinkDB
All DBs
Position
I:complement(1932342..1935806)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSAHPEHLILSGAPEGMDAALIARELSRGQPVIHIARDDRRMAAMRAALGFFAPQAVVLE
FPAWDTTPYDRVSPAGGVMAARVAVLTALAHGALKGPFILLTTLSAAMQRVPPRAALRGA
SFSATVGNRMDESALRAYLARMGFSQSPTVTEPGDFAVRGGIIDIYPPGDSGPIRLDMFG
DVLEGARRFDVESQRSTEKLDHVELAPMSEVILDEAAITRFRQNYRAEYGAASNDPLYEG
ISAGRKMAGMEHWLPWFHAGLESLFDYLPGAAVVADDHLDQVRDARAHTIAEQFEARREA
LARKGGTDTVYRPVPPSEMFPDEAEWKRWLAAHRLLRLSVLPQPPGPGVLDAGGRVGRNF
APERQAEKGNLFKALSEHIRKLQATHRVVVASFSEGARERLAGLIADEGVEGAKPIADLR
DLPGTPGALGLAVWPLEEGFTSEGAATGPLAVISEQDVLGDRLIRGAKRKRKAENFLRDT
TTLTPGDLVVHVEHGIGRYTGLETVMALKVPHDCVAIEYAGGDRLYLPVENIELLSRYGH
EEGLLDKLGGGAWQARKARLKERIKLIADKLMRVAAERLLRPAPVLEPEHHEVESFAARF
PYTETEDQAAAISDVAEDLAAGRPMDRLVVGDVGFGKTEVAMRAAFIAASQGRQVAVVAP
TTLLARQHFRTFAERFRGTAINVRPLSRFVSAKDAAETRKGLAEGTVDIVVGTHAVLAKQ
VRFKNLGLLIVDEEQHFGVGHKERLKELRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIG
TPPVDRLSIRTYVSEFDSVTIREALLREKYRGGQSFFVVPRLSDLPEIEEWLREHVPEVS
TIVAHGQLAAGDLDSRMNAFYDRGADVLLATTIVESGLDIPTANTMVVWRADMFGLAQLY
QIRGRVGRSKTRAYCYLTTKPRVPLTPQAMRRLKFLGAIDSLGAGFNLASQDLDLRGAGN
LLGEEQSGHIKEVGFELYQQMLEETIAKLKSGEIEGTPEDEWAPQLNLGVPVTIPESYVP
DLDVRLGLYRRLAELTTKVELEGFAAELIDRFGPLPREVNTLLLVIRIKAMAKRANISKL
DAGPKGATIQFHGDKFPNPAGLVEFIHDQRGQAKVSDNKIVVLRDWPGDADRIKGAFAIA
KELAAKIREGRAKG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgcatcccgaacacctgatcctttccggcgcgcccgagggcatggacgccgcc
ctgatcgcgcgcgaactgtcgcgcggccagcccgtcatccacatcgcccgcgacgaccgc
cgcatggcggcgatgcgcgccgcgctggggtttttcgctccgcaagccgtggtgctggaa
ttcccggcctgggacactacgccttacgaccgcgtgtcgcccgccggcggggtgatggcc
gcgcgcgtggcggtgctgacggccttggcgcatggtgcgctgaaggggcctttcatcctg
ctgaccacgctttcggccgcgatgcagcgggtgccgccgcgcgcggcgctgcgcggggcc
agcttctcggccaccgtgggcaaccgcatggacgagagtgccttgcgcgcctatctggcc
cgcatgggcttttcgcaatcgcccaccgtgaccgagcccggcgatttcgccgtgcgcggc
ggcatcatcgacatctatccgccgggcgattcgggaccgatccggctggacatgttcggc
gacgtgctggaaggcgcgcggcgtttcgacgtggaatcacagcgttccacagaaaagctc
gatcatgtcgagctggcgccgatgtccgaggtgatcctggacgaagccgcgatcacccgg
ttccgccagaactaccgcgctgaatatggcgccgcgtcgaacgacccgctttatgaaggc
atcagcgccgggcgcaagatggccgggatggagcattggctgccctggttccacgccggg
ctggagagcctcttcgattatctgcccggggccgcggtggtggcggacgaccacctggac
caagtccgcgacgcgcgcgcacataccatcgccgagcaattcgaggcccggcgcgaggcg
ctggcccgcaaggggggcaccgatacagtctatcgtccggtgccgccctcggaaatgttc
cccgacgaggccgagtggaagcgctggcttgccgcgcatcgcctgctgcggctctcggtg
ctgccgcagccgcccgggccgggcgtgctggatgcgggcggccgggtcgggcgcaatttc
gcacccgagcggcaggccgaaaagggaaacctgttcaaagctctgtcggagcatattcga
aaacttcaagccacgcatcgcgtcgtggtcgcgagcttctccgaaggtgcccgcgaacgc
ctggccgggctgatcgccgacgagggggttgagggcgcaaagcccatcgccgatctgcgc
gacctgcccggcacgcccggcgcgctggggctggcggtctggccgctggaggaagggttc
acctcggagggtgcggcgaccgggccgctggcggtgatctcggaacaggacgtgctgggc
gaccggctgatccgcggcgcgaagcgcaagcgcaaggccgagaatttcctgcgcgacacc
acaacgctgacccccggcgacctggtggtgcatgtcgagcatggcatcggccgctatacc
gggctcgagaccgtgatggcgctgaaggtgccgcatgactgcgtcgccatcgaatatgcc
ggcggcgaccggctgtatctgccggtcgagaacatcgagctgctcagccgctatggccat
gaggaaggcctcttggacaagctgggcggcggggcctggcaggcgcggaaagcgcggctg
aaagagcgcatcaagctgattgccgacaagctgatgcgcgtcgcggccgaacgcctgttg
cgtcccgccccggtgctggagcccgagcatcacgaggtcgaaagcttcgccgcccgcttc
ccctataccgagaccgaggaccaggcggcggcgatctcggatgtggccgaggacctggcc
gccggccggccgatggaccggctggtggtgggcgacgtcggcttcggcaagaccgaggtt
gccatgcgcgcggccttcatcgccgccagccagggtcggcaggtcgccgtggtggcgccg
accacgctgctggcgcgccagcatttccgcacctttgccgagcgcttccgcggcaccgcg
atcaacgtccggccgctgtcgcgcttcgtctcggccaaggacgcggccgagacccgcaag
ggcttggccgagggcaccgtggacatcgtcgtcggcacccatgccgtgctggcgaagcag
gtgcgcttcaagaacctcggcctgctgatcgtcgacgaagagcagcatttcggcgtcggc
cacaaggagcggctgaaggagctgcgcagcgacatccatgtcctgaccctgaccgcgacg
ccgatcccgcgtacgctgcaactgtcgctgaccggggtgcgggacctgtcgatcatcggc
acgccgccggtggaccggctgtcgatccgcacctatgtcagcgagttcgacagcgtcacc
atccgcgaggctctgctgcgcgagaaatatcgcggcgggcagagcttctttgtcgtgccg
cgcctgtcggacctgcccgagatcgaggaatggctgcgggaacacgtccccgaggtcagc
acgattgtcgcgcatggccagctggcggccggcgatctggatagccgcatgaacgccttc
tacgaccgcggcgccgatgtcctgctggcgacgaccatcgtcgaatcgggcctggatatt
ccgaccgcgaacaccatggtggtctggcgcgccgacatgttcggcctggcgcagctttac
cagatccgcggccgggtcgggcggtcgaaaacgcgggcctattgctacctgaccaccaag
ccccgcgtgccgctgaccccgcaggcgatgcggcggctgaagttcctgggcgccatcgac
agcctgggtgcgggcttcaatctggcctcgcaggacctggacctgcgcggcgccgggaac
cttctgggcgaggagcagtccggccatatcaaggaggtcggcttcgagctttaccagcag
atgctggaggagaccatcgccaagctgaaatccggcgagatcgagggcacgcccgaggat
gaatgggcgccgcagctgaacctgggcgtgccggtgacgattcccgaaagctatgtgccc
gacctggacgtgcggctggggctctatcgccggctggccgagctgaccaccaaggtcgag
ctggagggcttcgccgccgagctgatcgaccgcttcggcccgctgccgcgcgaggtgaat
acgcttctgctggtcatccgcatcaaggcgatggcgaagcgggcgaatatctcgaaactg
gacgccgggcccaagggggcgacgatccagttccacggcgacaagttcccgaacccggcc
gggctggtcgagttcatccacgaccagcgcggccaggccaaggtctccgacaacaagatc
gtggtgctacgcgactggccgggggacgccgaccgcatcaagggcgcctttgccatcgcc
aaggaactggcggcgaagatcagggaaggcagagcgaaggggtga
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