Profundibacter amoris: BAR1_00520
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Entry
BAR1_00520 CDS
T06831
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pamo
Profundibacter amoris
Pathway
pamo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pamo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BAR1_00520 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pamo03021
]
BAR1_00520 (rpoC)
03400 DNA repair and recombination proteins [BR:
pamo03400
]
BAR1_00520 (rpoC)
Enzymes [BR:
pamo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BAR1_00520 (rpoC)
Transcription machinery [BR:
pamo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BAR1_00520 (rpoC)
DNA repair and recombination proteins [BR:
pamo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BAR1_00520 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
BSH_RND
Peptidase_M23
RnfC_N
PTS_EIIA_1
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AXX96547
UniProt:
A0A347UCG9
LinkDB
All DBs
Position
115436..119698
Genome browser
AA seq
1420 aa
AA seq
DB search
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLQYGQLMSEEEHMDAQDAYGMDAFT
AGIGAEAIREMLSQIDLEGEAEALRADLAVATGELKPKKIIKRLKIVEAFLESGNRPEWM
IMTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGMSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LETRVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTMERQGMKGEGMIFASVEEVQHAL
DAGEVHLHARITARIKQIDEEGNEVLKRFETTPGRMRLGALLPLNAKSPFDLVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMTVGFREAFKAGISFGKDDMLIPDNKWDIVNGVRE
QVKEFEQQYMDGLITQGEKYNKAVDAWSKCSDEVAEAMMSEMSAMRVDDAGAEMEPNSVY
MMAHSGARGSPAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVRMHDCGTENSITASAAVNDGEVVASLSERVLGRV
AAEDILVPGTDEVIVRKNELIDEHMADRIEKADLASIRMRSPLTCEAEEGVCAACYGRDL
ARGTLVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFQEASQAGTVGFKNAN
LLKNANGEMIVMGRSMQLVIIDENGQERAHHKLTYGSKVHVKEGQKVNRGDKLYEWDPYT
LPIITEKAGTVKYIDLVAGVAIREETDDATGMTQKVVVDWRAAPKGNDLKPEIIILDKNG
EAVANAAGHPMTYAMSVDAILSVEDGQEVKAGDVIARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRYGRDYKNKRRISIEPADETMEPVEYMVPKGKHIPVAEGDFIQ
KGEYIMDGNPAPHDILAVMGVEALANYMVDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ILDSGETTLLKGEHVDKAEFDAANEKAKAKGVREAKGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATMQTRKIAQERDNVVIEARRK
EAEAAAALAAPTEDIGGGADVVDDDNVFDSGLVDTPESRE
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgtttaacccgctgacaccccccaaggtgtttgac
gagatcaaggtatcgctggcatcgccggaacgtatcctttcgtggtctttcggggaaatc
aagaaacccgaaaccatcaactaccgcacgttcaagcccgaacgcgacggcctgttctgt
gcgcgtatctttggcccgatcaaagattacgaatgcctgtgcggcaaatataaacgcatg
aaataccgcggcgttgtctgcgagaaatgcggtgtcgaagtcacgctgcaaaaagtgcgc
cgcgaacggatgggccatattgaactggccgcacccgttgcgcacatctggtttctgaaa
tcgctgccatcgcgcattggcctgatgctggatatgaccctgcgtgatctggaacgtatc
ctgtatttcgaaaactatgtggtgatcgaacccggcctgaccgacctgcaatatggccag
ttgatgtcggaagaagagcacatggatgcgcaggatgcctatggcatggacgccttcacc
gccggtatcggtgccgaagccatccgcgaaatgctgagccagattgatctggaaggcgaa
gccgaagccctgcgtgccgatctggccgtggccaccggcgaattgaagcctaaaaagatc
atcaagcgtctgaaaatcgtcgaggccttccttgaatccggcaaccgtccggaatggatg
atcatgaccgttgtgcctgtgatcccgccagaattgcgcccgctggtgccgctggatggt
ggccgttttgcgacatccgatttgaacgatctgtatcgccgcgtgatcaaccgcaacaac
cgcctgaagcgtctgatcgaactgcgtgcgcccgatatcatcgtgcgtaacgaaaaacgt
atgttgcaggaatctgtcgatgcgctgtttgacaacggccgccgtggccgcgtgattaca
ggggccaacaaacgcccgctgaaatcgctgtcggatatgctgaaaggcaaacagggccgt
ttccgtcagaaccttttgggtaaacgcgtcgacttttccggtcgttcggtgattgtgacc
ggaccggaactaaagctgcaccaatgtggtctgcccaaaaagatggcgctggagctgttc
aagccgttcatctactcgcggcttgaggccaaaggcatgtcttcgaccgtgaagcaggcg
aaaaagctggttgaaaaggaacgtcccgaggtttgggatattctggacgaagtgatccgc
gaacaccctgtgatgctgaaccgtgcgccgacgttgcaccgtttgggcattcaggcgttt
gaacctgtgctgatcgaaggtaaagccattcaactgcacccgctggtttgttccgcgttc
aacgccgactttgacggtgaccagatggcggtccacgttccgctgagccttgaggcccag
ctggaaacgcgcgtgctgatgatgtcgaccaacaatgtgttgtcccctgccaacggcgca
ccgattatcgtgccgtcacaggatatgatccttggtctatattatgtcacgatggagcgt
cagggcatgaaaggcgaaggcatgatctttgccagcgtcgaagaggtgcaacacgcactg
gatgcgggtgaagtgcatctgcacgccaggatcaccgcgcggatcaagcagattgatgag
gaaggcaacgaagtgctgaagcgctttgaaaccacgccgggccggatgcgtttgggggct
ttgctgccgctgaacgccaaatccccgtttgatctggtcaaccgtttgctgcgcaagaaa
gaagtgcagcaggtgattgatacggtttaccgttattgcggtcagaaagagtcggttatc
ttctgtgaccagatcatgaccgtcggtttccgcgaagcgttcaaggccggcatttcgttt
ggtaaagacgatatgctgatccccgacaacaaatgggacatcgttaatggtgttcgcgaa
caggtaaaagagttcgaacagcagtatatggacggcctgattacacagggcgaaaaatac
aacaaagctgtggatgcctggtcgaaatgttccgacgaagttgccgaagcgatgatgtct
gaaatgtccgccatgcgcgtggatgatgccggcgccgaaatggagccgaacagcgtttac
atgatggcccactcgggcgcgcgtggttccccggcgcagatgaaacagctgggcggtatg
cgtggtctgatggccaaaccttcgggcgagattatcgaaacgccgattatctcgaacttt
aaagaaggcctgacggtgcttgagtatttcaactcgacccacggggcgcgtaaaggtctg
gccgatacggcgcttaagacggcgaactcgggttatctgacccgtcgcctggtggacgtt
gcgcaggactgtatcgtgcggatgcacgattgcggcactgaaaactcgatcaccgcatcg
gctgccgtgaatgatggcgaagtggttgcatccctgtccgaacgtgttctgggccgtgtg
gctgccgaagacattctggttccgggcaccgacgaagttatcgttcgcaagaacgaactg
atcgacgagcatatggcagaccggatcgaaaaggccgatctggcctcgatccgcatgcgt
tcaccgctgacctgtgaggcggaagagggcgtatgtgcggcctgttacggtcgtgacctt
gcccgtggcaccctggtgaaccagggcgaagcggtcgggattatcgcggcgcagtcgatt
ggtgaacccggcacacagctgacaatgcggacattccacattggcggcattgcgcagggt
ggccaacagtcgttccaggaagcatctcaagccggcacagtcggtttcaaaaatgcaaac
ctgctgaaaaatgccaatggcgaaatgatcgttatgggccgcagcatgcaattggtgatc
atcgatgaaaacggtcaggaacgtgcacatcacaagctgacatatggctcgaaggtgcat
gtaaaagaaggccagaaggtcaaccgcggcgacaagctgtacgaatgggatccctacacc
ctgccaatcatcaccgaaaaggcaggtacagtgaaatacatcgatctggttgccggtgtg
gccattcgtgaagaaaccgatgatgccacaggtatgacccagaaggtcgttgtcgattgg
cgcgctgcgcccaaaggcaatgacctgaagccggagatcatcattctggacaagaacggc
gaagccgtggcaaacgcggcaggccacccgatgacctatgcgatgtcggtggatgccatt
ctgtcggtggaagacggccaggaggtcaaagccggtgacgtaattgcgcgtatcccgcgt
gaaggcgcgaaaaccaaggacatcaccggtggtctgccgcgtgttgccgaactgttcgaa
gcccgtcgtcccaaagaccacgcgatcattgccgaaatcgatggttacgttcgctacggc
cgcgactacaagaacaagcgccggatttcgatcgagccagccgatgaaaccatggagccg
gtcgaatacatggtgcccaaaggcaagcacattcctgtggctgaaggtgacttcatccag
aagggtgaatacatcatggacggcaaccccgcgccgcacgatattcttgcggttatgggg
gtcgaggccctggccaactacatggtggacgaggttcaggatgtttaccgtctgcaaggc
gtgaagatcaacgacaagcatatcgaagtgatcgtgcgccagatgttgcagaagtgggaa
attctggacagcggcgaaaccacgttgctgaaaggcgaacatgtcgacaaggccgagttt
gacgccgcgaatgaaaaggcgaaagccaaaggcgttcgcgaggcgaaaggcgagccgatc
ctgctggggatcaccaaggcgtccttgcagacccgttcgtttatctcggcggcctcgttc
caggaaaccacgcgggttctgaccgaagcatcggttcagggcaagaaagacaagctggtt
ggcctgaaagagaacgtaatcgttggccgtctgatccctgccgggaccggtggggcaacg
atgcagacccgcaaaatcgcgcaagagcgtgataatgtggtgatcgaagcccgccgcaaa
gaagccgaagccgctgccgcattggccgcaccgacggaagatattggcggcggtgccgac
gttgttgacgatgataacgtgtttgacagcgggctggtggatacaccggaaagccgcgag
taa
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