Profundibacter amoris: BAR1_06715
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Entry
BAR1_06715 CDS
T06831
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pamo
Profundibacter amoris
Pathway
pamo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pamo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAR1_06715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pamo03019
]
BAR1_06715
03009 Ribosome biogenesis [BR:
pamo03009
]
BAR1_06715
Enzymes [BR:
pamo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BAR1_06715
Messenger RNA biogenesis [BR:
pamo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BAR1_06715
Ribosome biogenesis [BR:
pamo03009
]
Prokaryotic type
rRNA processing factors
BAR1_06715
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF908
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AXX97650
UniProt:
A0A347UFM2
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All DBs
Position
1343360..1346101
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AA seq
913 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGTKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFID
YGGNRHGFLAFSEIHPDYYQIPVADREALLAEERAYAKAMAEEDEKPKPKRRRRSRSRSK
AEEVKSDDSVETKEVENNGASGMDVVDLGEESVEGSSPMELVAETPVDTPESGEADEAAK
GETPTDAPADDVKADDADTTDDADGEDEPLEATEKDDRIESVADDDAPEELRRVRKPRPR
RYKIQEVVKVRQILLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNA
ADRKKLKAIANEIEVPEGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEEIRALTLKSIAPA
KIYEEGNLIKRSIRDLYNREIDEVLVEGEEGYRVAKDFMKMIMPSHAKNVKLYNESMPLF
ARYQVEGYLASMFNPTVQLKSGGYIVIGITEALVAIDVNSGRSTKEGSIEDTALKTNLEA
SDEVARQLRLRDLAGLIVIDYIDMDERRNNNAVEKRLKDRLKNDRARIQVGRISGFGLME
MSRQRLRPGMIEATTQPCSHCHGTGLIRSDENLALSILRQLEEEGTRKRSREVLLKAPVG
IANYLMNNKREHIAQIEVRYGMSVRIEADPFLVSPDFSIEKFKTASRVVKQVSAPVVSGS
AAIMDDIDDAEVVEEETPVEAVDEGEAEAQPKKRRRRRRRRRGRGGDNAEATQNNGEEAV
NADAAPEGEAMAEDAAKDEAATEAPAEAEEKAEDEKPKRKPRKRAPRKSAKAADAETSEV
KTDEAASKEAAPEEAAEEPKKKPVRRRRKKADTEEAPKAGEAAKEAPEAEVAAEEEKPAP
KKRTRRKPAAKKAKVDEVDAKPAEEAAPVAETKPEPIEVTPEPVAAKPEPTPEPAPKPKA
DKPKRKGWWSLGR
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaagatgcttatcgatgccacccacgcggaagaaacccgcgttgtggtggtt
gatggaaccaaggttgaggaattcgactttgagtctgaaaacaaacgccagctagctggc
aatatttatctggcaaaagttacacgggtcgagccgtcgctacaggcggcctttatagac
tacggcggaaaccggcatggttttctggcgttttcggaaattcatcccgattattaccag
atccctgtcgccgaccgcgaggccctgctggccgaggaacgcgcctatgccaaggctatg
gccgaggaagacgaaaaacccaaacccaaacgccgccgccgctcgcgctcgcgcagcaag
gccgaagaggtcaagtcggatgattccgtcgagacaaaagaagtcgagaacaacggcgca
tccggtatggatgtggtcgatctgggtgaagagtccgtcgagggatcatcgccaatggaa
ctggtcgccgaaacaccggtagacacacccgaatccggcgaggccgatgaggcagccaag
ggcgaaacgcccaccgacgcacctgctgacgatgtgaaagcagacgacgcggatacgacg
gatgatgcggatggcgaagatgaaccgctggaagcaaccgaaaaagacgaccggattgaa
tcggtggccgatgatgacgcccccgaggaactgcgccgcgtgcgcaaaccccgtccgcgc
cgttacaaaatccaggaagtggtcaaggttcgccagatccttctggtgcaagtggtaaaa
gaggaacgcggcaacaagggcgcggccctgaccacctatctgtcgctggccggccgttat
tgcgtattgatgcccaacaccgcgcgtggcggtggcatttcccgcaaaatcaccaacgcc
gccgaccgcaagaaactgaaagccattgcaaacgaaatcgaagtgcccgaaggcgccggt
ctgattgtgcgcacggcaggtgccaagcgcaccaaatccgagatcaaacgcgactacgaa
tatttgcagcgcttgtgggaagaaatccgtgcgctgacgctgaaatccattgcgcctgcc
aagatttacgaagaaggcaacttgatcaaacgctcgatccgcgacctgtataaccgcgag
atcgacgaggttttggtggaaggcgaagaaggctaccgcgtggccaaggattttatgaaa
atgatcatgccgtcccacgccaagaacgtgaaactttacaatgaatccatgcccttgttc
gcccgctatcaggtcgaaggctatctggccagcatgttcaacccgacggttcaactgaaa
tccggcggctacatcgtgatcgggattaccgaagcactggtggcgattgatgtgaactcg
ggtcgctcgaccaaagagggcagcattgaggacacggcgctgaaaaccaatctggaagcc
tcggacgaagtggcacgccagctgcgtttgcgcgatctggccggtctgatcgtgatcgat
tacatcgatatggacgagcgccgcaacaacaacgcggttgaaaagcgcctgaaggaccgg
ttgaagaacgaccgcgcccgcattcaggtgggtcgcatttccggtttcggcctgatggaa
atgtcgcgccagcgcctgcgcccgggtatgatcgaggcgacaacacagccctgttcgcat
tgccacggcaccggcctgatccgttcggatgaaaatctggccctgtcgatcctgcgccag
ctggaagaagagggcacgcgcaaacgtagccgcgaggttctgttgaaggcgcctgtgggc
atcgccaattacctgatgaacaacaagcgcgaacatatcgcccagatcgaggtgcgttat
ggcatgtccgtgcgcatcgaagccgatccgttccttgtgtcgcctgatttctcgatcgag
aagttcaagaccgccagccgcgttgtcaaacaggtcagcgcgccagtggtctcgggtagt
gccgcgatcatggatgatatcgatgatgccgaggtggtcgaggaagaaacaccggtggaa
gccgttgacgagggggaagccgaggcacagcccaagaagcgccgccgccgtcgccgtcgt
cgtcgtggccgtggtggggacaacgccgaggcaacgcagaataacggtgaagaagcagtg
aatgccgacgcagcacccgagggtgaagccatggcagaagatgcggccaaggacgaggcg
gctactgaagccccagccgaggccgaggaaaaagccgaggacgaaaagcccaagcgcaag
ccgcgcaaacgcgccccgcgcaaatcggccaaagcggctgatgcggaaacttcggaagtg
aaaaccgacgaggccgcttcaaaagaagctgcaccagaggaagctgcagaagagccgaag
aaaaagccggttcgccgccgtcgcaagaaagcggataccgaagaagcgcccaaagccggg
gaggctgcaaaagaagcccctgaagccgaggtcgcggccgaggaagagaaacccgcgccc
aagaaacgcacacggcgcaagcctgctgcgaaaaaggccaaggtggacgaggttgacgcc
aagccggcagaagaagccgcgcctgtagccgaaaccaagcccgagccgatagaggtaaca
cccgaaccggttgcagcaaaacccgagcccacaccagaacccgcccccaagccaaaggca
gacaagcccaagcgcaagggctggtggtcattgggccggtaa
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