Pantoea sp. MT58: IAI47_03050
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Entry
IAI47_03050 CDS
T10894
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pamt Pantoea sp. MT58
Pathway
pamt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pamt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IAI47_03050 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pamt03021
]
IAI47_03050 (rpoD)
Transcription machinery [BR:
pamt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IAI47_03050 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
PAC1
HTH_SUN2
HAP1_N
AP_endonuc_2
Eclosion
Motif
Other DBs
NCBI-ProteinID:
QNQ59258
LinkDB
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Position
complement(629193..631034)
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AA seq
613 aa
AA seq
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MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAP
DADDLMLNENSSDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLDQYDKVEAGESRLSDLITGFVDPNAEEDIAPTA
THVGSELSEADRNDDEEEDEEDDDSSDDDNSIDPELAREKFSDLRKQYEATRSVIKSKGR
SHAAAVAEIQNLSDVFKQFRLVPKQFDYLVGSMRTMMERVRTQERLIMKLCIELCKMPKK
NFITLFTGNETNESWFKAALAMNKPWSEKLLEVQDDVMRSLQKLAQVEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESL
RSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaagcttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgactcagatcag
atcgaagacatcatccagatgattaacgacatgggtattcaggtggttgaagaagccccg
gatgccgacgatctgatgctgaacgaaaacagctccgatactgatgaagatgccgcagaa
gctgccgctcaggtgttatccagcgttgaatctgaaatcgggcgtactaccgacccggtt
cgcatgtatatgcgtgaaatgggtaccgttgaactgctgacgcgcgaaggcgaaatcgac
atcgctaagcgtattgaagacggtatcaaccaggttcagtgttctgtcgccgaataccct
gaagccattacttatcttctggatcagtatgacaaagttgaagcaggcgaatcacgcctc
tccgacctgatcaccggtttcgtcgatcctaacgcagaagaagatattgccccaacggca
acgcacgtaggctctgaactttctgaagccgatcgtaacgacgatgaagaagaagatgaa
gaggatgacgacagctccgacgacgataactcaatcgacccggaactggcgcgcgagaag
ttttctgacctgcgtaagcagtatgaagcgacccgcagcgtgattaagagcaaaggtcgc
agtcatgctgctgccgttgccgaaatccagaacctttctgacgtcttcaaacagttccgc
ctggtaccgaagcagttcgactacctggtaggcagcatgcgcaccatgatggaacgtgtc
cgtactcaggaacgtctgatcatgaagctctgtattgagctgtgcaaaatgccgaagaag
aacttcatcacgctgtttaccggcaacgaaaccaacgaaagctggttcaaagccgctctg
gcgatgaacaagccgtggtctgaaaagctgctggaagtgcaggatgacgtgatgcgttcc
ctgcagaaactggcacaggtggaagaagagaccggcctgaccattgaacaggttaaagat
attaaccgtcgcatgtcgatcggtgaagccaaagcgcgtcgcgctaagaaagagatggtg
gaagctaacctgcgtctggttatttcgattgcgaagaaatataccaaccgtggtctgcag
ttcctcgacctgattcaggaaggtaatatcggcctgatgaaagcggtagataagtttgaa
tatcgccgtggttacaagttctcgacttatgcgacctggtggatccgtcaggctatcacc
cgctctatcgccgaccaggcgcgtaccatccgtattccggtgcatatgattgagacaatc
aacaagctcaaccgtatttcgcgccagatgctgcaggagatgggccgcgaaccaacgccg
gaagagctggctgagcgtatgctgatgccagaagataaaatccgcaaagtactgaaaatc
gctaaagagccgatctctatggagacgccgattggtgatgatgaagattcacatctgggc
gattttatcgaagacaccacgctggagctgccgctggattctgctacgtcagagagcctg
cgttctgccacccatgacgtgctggctggcctgaccgcgcgcgaagcgaaagtgctgcgc
atgcgtttcggtatcgacatgaacacggaccatacgctggaagaagtgggcaaacagttc
gacgttacgcgtgagcgtattcgtcagattgaagcgaaagccctgcgtaaactgcgccat
ccgagccgttcggaagtgctgcgtagcttcctcgacgattaa
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