Pantoea sp. MT58: IAI47_04115
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Entry
IAI47_04115 CDS
T10894
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pamt Pantoea sp. MT58
Brite
KEGG Orthology (KO) [BR:
pamt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pamt03009
]
IAI47_04115 (rlmD)
Enzymes [BR:
pamt01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
IAI47_04115 (rlmD)
Ribosome biogenesis [BR:
pamt03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
IAI47_04115 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
RrnaAD
MTS
TRM5-TYW2_MTfase
Thioredoxin_6
Methyltransf_23
Cons_hypoth95
PDGF
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
QNQ59456
LinkDB
All DBs
Position
862588..863904
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AA seq
438 aa
AA seq
DB search
MAQFYVAKQRVTTQQRLTVTIEELDPFGQGVARHKGKTLFVAGALPGEQAEIVLTEDKRQ
FARAKVTRLISRSPARVTPRCPHYDRCGGCQQQHADVALQQQSKAQALSRMLSQAASQSV
AVDEVIAGQPWGYRRRARLGLQWQNKAQRLQMGFRQEASNDLVDIQHCPVLVPELEALLV
PLHQCLSDLRAVRRLGHVELVLADNGPLMILRHLDALHTDDREKLEQFSHKHQLMLFLDA
GDENLTALSESMPFYHSHQLKLTFNPQDFIQVNDGVNQQMVAKAIAWLDLQPEDRVLDLF
CGMGNFTLPVGIFVQNVVGVEGIAALVRQAAYNADLNNLKNVSFFQHNLEEEVSRQPWAT
QGFNKVLLDPARAGAAGVMAHVVKLAPERVVYVSCNPTTLARDSQILLSAGYQLERVAML
DMFPHTRHLESMVLFRKT
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctacgttgcaaaacagcgcgtgacgacgcaacaacgcctcaccgtcacc
attgaggagcttgacccgtttggacaaggtgtggcacgccacaagggcaaaaccctgttt
gtcgcgggtgccctgccgggtgaacaggctgagattgtgcttacagaggataaacgtcaa
tttgcccgggcgaaagtgactcggctgattagccgcagtccggctcgggtgacaccgcgc
tgcccgcactatgatcgctgcggcggttgccagcagcagcatgccgatgtggcactgcaa
cagcagagcaaagcgcaggcactgagccggatgctgagccaggccgcctcacagagtgtc
gcggtggatgaggtgatcgccggtcagccctggggttaccgccgtcgtgcgcgtctgggt
ctgcaatggcaaaataaagcgcagcgattgcagatgggattccggcaggaagccagcaac
gatctggtcgatatacagcactgccccgttttagtgcccgaacttgaggcattgctggtt
ccgctgcaccagtgtctcagcgacctgcgagctgtcaggcgtctcgggcatgtggaactg
gtgctggcggacaatggcccgctgatgattctgcgccatcttgatgcgctgcatacagat
gaccgtgaaaaactggaacagttttcgcataaacatcagctgatgctgttcctggatgcg
ggcgatgaaaatctgacggcgttaagtgaatcgatgcccttttatcactctcatcaactt
aagctaaccttcaatccacaggattttatccaggttaatgatggggtgaatcagcagatg
gtcgcgaaggcgatcgcctggctggatttgcagccggaagaccgcgtgctggatctgttt
tgtggcatgggaaacttcacacttcctgtaggaatcttcgtacaaaatgtggttggtgtg
gaggggattgcagcattagtgcggcaggcagcgtataatgctgatttgaataatcttaaa
aatgtaagtttctttcagcataatctggaagaagaggtgtcgcgccagccgtgggcgaca
caggggtttaacaaggtattactcgatccggcacgcgccggggctgcgggcgtaatggcg
catgtggttaaacttgcaccagaacgtgtggtctatgtttcgtgtaatcccacaacactc
gcccgcgacagccagatattgctgtcagcaggctaccaattggaaagggtcgcgatgctg
gatatgtttcctcatacccgtcatctcgaatccatggtgctgttcagaaaaacataa
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