Pantoea sp. MT58: IAI47_11975
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Entry
IAI47_11975 CDS
T10894
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pamt Pantoea sp. MT58
Pathway
pamt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pamt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IAI47_11975 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamt03400
]
IAI47_11975 (mfd)
Enzymes [BR:
pamt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IAI47_11975 (mfd)
DNA repair and recombination proteins [BR:
pamt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IAI47_11975 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNQ57449
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All DBs
Position
2534696..2538139
Genome browser
AA seq
1147 aa
AA seq
DB search
MPEQTRYTLPVKSGDHRQLGQIIGAAHAVECASITEHHAGPVLMITPDTQTALRLLDEIR
QFTDLPVTHLADWETLPYDSFSPHQDIISARLSTLYQLPVMQRGMLIMPVNTLMQRVCPH
SFLHGHALVMKQGQKLSRDRLRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPMGSDQPY
RIDFFDDEIDSLRLFDVDSQRTLEAVTEINLLPAHEFPSDKAAIELFRSRWREIFDVRRE
SEHVYQQVSKGTLPAGIEYWQPLFFEQPLPSLFSYLPDNTLIVNCGDLEGSARRFWQDAE
ARYENRRVDPMRPLLEPVTLWLRPDALMGELKAWPRIQMTNEVLPDKAANTNLGYTPLPD
LAVQAQAKAPLDHLRQFIETFSGAVVFSVESEGRRETLQELLARIKLRPQPVHRFDETVD
DRFSLMIGASERGFIDTQGNRALICESDLLGERVSRRRQDTRRTINPDILIRNLAELSPG
QPVVHLEHGVGRYIGLTTLEAGGIQAEYLMLSYANDAKLYVPVSSLHLISRYAGGADDNA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKSGFAFKHNREQYQLFCESFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAIENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRTAKEQAQVLEQASDGKIDILIGTHKLLMSDLKW
HDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREFDDLVIREAILREVLRGGQVYYLYNDVENIEKAAQRLSELVPEARVAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKSMTADAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
DEQSGQMETLGFTLYMELLENAVDALKAGREPSLEDLTSNQTEVELRMPALLPETFIPDV
STRLSLYKRIASAEVEEELQELKVEMIDRFGLLPDPARNLLDVAIIRLKARAVGLRKIEA
SDKGGYFDFAPKNNVDPAWLIGLLQKEPQQWKLDGPTRLRFTRELSERKIRMEWVQGFVS
QLAEHQA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaacagactcgttataccctgcccgttaaatccggcgaccaccgtcagcttggc
cagattataggcgcagcgcacgcggtggagtgtgccagcattaccgaacaccatgcgggt
ccggtattgatgattacccccgatacccaaaccgccctgcgtctgctggatgagatccgt
cagtttaccgatctgccggtgacgcacctcgctgactgggagacactcccctacgacagc
ttctcgccgcatcaggatattatctccgcgcgcctgtcgacactctaccagctgccggtg
atgcagcgcggtatgctgatcatgccggtcaacaccctgatgcagcgcgtctgcccgcac
agtttcctgcatggccatgcgctggtgatgaagcagggacaaaaactgtcacgcgaccgg
cttcgcgaccagcttgagcaggccggttatcgccatgtcgatcaggtgatggagcacggt
gaatacgccacgcgcggcgccctgctcgacctgttcccgatgggcagcgatcagccttat
cgcatcgactttttcgatgatgagatcgacagcctgcgcctgttcgacgtcgacagtcag
cgcacgctggaagccgtcacggaaattaacctgctgccggcccatgagtttcccagcgac
aaagcggctattgagctgtttcgcagccgctggcgcgaaatttttgatgtgcgccgcgag
tcggagcatgtctatcagcaggtaagtaaaggcacgctgcctgcgggcatcgaatactgg
cagccgctcttttttgaacagccgttacccagcctgttcagctatctgcctgataacacc
ctgattgtgaactgtggcgatctggaaggcagcgcccgccgcttctggcaggatgctgag
gcgcgttatgagaaccgccgcgttgacccgatgcgtccgctgctggagccggttaccctg
tggctgcgtccagatgccctgatgggtgagttgaaagcctggccacgcattcagatgacc
aatgaagtgctgcccgacaaagcggcgaataccaatctcggttacaccccgctgcccgac
cttgccgttcaggcgcaggcgaaagcgccgctcgaccatctgcgtcagtttattgaaacc
ttcagcggtgctgtcgtcttctcggttgaaagcgaaggccgccgcgagaccctgcaggaa
ctgctggcccggattaaactgcgccctcagccggtacatcgtttcgatgaaactgtcgac
gatcgtttcagtctgatgattggcgccagcgagcgcggtttcattgatacccagggtaac
cgggcactgatttgcgaaagcgatctgctgggcgaacgcgtcagccgtcgccgtcaggat
acccgtcgcactatcaatccggacattctgatccgtaacctggcggagctgagccccggc
cagccggtggtgcatctggagcacggtgtcggtcgttatatcggcctgacgacgctggaa
gcgggtggtattcaggcagaatacctgatgctctcttacgccaatgacgccaaactctat
gtgccggtttcgtcgctgcacctgatcagtcgctacgcgggtggcgcggacgataacgcc
ccactgcataaactgggcagcgatgcctggtcacgcgcccggcagaaagcggctgagaaa
gtgcgtgatgtggcggcggaactgctggatatctatgcccagcgcgccgccaaatccggc
tttgcctttaagcataatcgtgaacagtatcagctgttctgcgaaagcttcccctttgaa
accacaccggaccaggcgcaggcaatcaatgcggtgctgagtgatatgtgccagccgctg
gccatggaccgcctggtgtgcggcgacgtcggcttcggtaaaaccgaagtggcaatgcgc
gcggcgtttctggcgattgagaaccataaacaggtggccgtgctggtgccgaccaccctg
ctggcacagcagcactacgataacttccgcgatcgcttcgccaactggccggtccgcatt
gagatgctctcccgtttccgtaccgccaaagagcaggcacaggtgctggaacaggccagt
gacggcaagattgacattttaatcggcacccataagctgctgatgagcgatctcaaatgg
cacgatctcggcctgctgattgttgatgaagagcaccgcttcggagtgcgtcacaaagag
cgcatcaaggcgatgcgtgccgatgtggacattctgaccctgaccgccacgccgatcccg
cgtacgctgaatatggccatgagcggcatgcgcgatctctcgattatcgccacaccgcct
gcccgccgtttagcggtaaaaacctttgtgcgtgaatttgacgatctggtgatccgtgaa
gcgatcctgcgtgaagttctgcgtggcggacaggtctactatctttacaacgacgttgaa
aatattgagaaagcggcgcagcgtctcagcgaactggtgccggaagcgcgtgtggcgatt
ggtcatggccagatgcgtgagcgcgatctggaacgggtgatgaacgatttccatcatcag
cgttttaacgtgctggtctgtaccaccattatcgaaaccggtatcgacattccgactgcc
aataccatcatcattgagcgggccgatcactttggtctggcacagctgcatcagctgcgt
ggtcgcgttggccgttcgcatcatcaggcttatgcctggctgttaacgccgcatccaaaa
tcgatgaccgccgatgcacataagcgactggaagcgatcgcctctctggaagatctggga
gccggttttgcgctggctacgcacgacctggagattcgcggtgccggcgagctactgggt
gatgagcagagcggacagatggagacgctgggcttcacactctatatggaactgctggag
aatgcggtcgacgcgctaaaagcgggtcgcgagccgtcactggaagatctcaccagtaat
cagacagaggtagagctgcggatgcccgccctgctgccagagacgtttatcccggatgtc
agcacccgtctttcgctctataagcgcatcgccagtgcagaggttgaagaggaattacag
gagctgaaagtggagatgatcgaccgatttggcctgctgcccgatccagcccgaaatctg
ctggacgtggcgattatccgtctgaaggcccgtgctgtcggtctgcgtaagatcgaagcc
agcgacaaaggcggttatttcgattttgcgccgaagaacaatgtggatccagcatggctg
atcggcctgttgcagaaagagccacagcagtggaagctggatggcccgacacgcctgcgg
tttacccgcgagctgtcggaaagaaagattcgcatggagtgggtgcagggctttgtttca
caactggctgagcatcaggcgtaa
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