Pantoea sp. MT58: IAI47_12110
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Entry
IAI47_12110 CDS
T10894
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pamt Pantoea sp. MT58
Pathway
pamt03018
RNA degradation
Brite
Enzymes [BR:
pamt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IAI47_12110 (rne)
Messenger RNA biogenesis [BR:
pamt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IAI47_12110 (rne)
Ribosome biogenesis [BR:
pamt03009
]
Prokaryotic type
rRNA processing factors
IAI47_12110 (rne)
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Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QNQ57474
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Position
2562341..2565793
Genome browser
AA seq
1150 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSSYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALDLPEGMGLIVRTAGVGKSAESL
QWDLSFRLKHWEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKDNTKEVHAIVPVQVASYLLNEKREAVNAIEKRQGGVRAIIVPDDKMQ
TPHYSVLRVRKGEETQTLSYHLPKLHEAEMAMPSEEEHAERRRPEQPALAAFVMPDAPPA
PVEVEPEAQRAEAQPAAKAKPAVAAPATASTGFFGRLLGGLKKMFASEEAPAAKPVTAEV
AEPQKAPEGEQENNNGRGERRSNNNNRRNNNRRERTPRNGDNAQSREGREPRESREPRES
REPRESREPRENREPREGNNNNRRNKRESQSGEVREERPALSEEARQQRDEQQQQRREQR
AERQRRRQEEKRAGEEAAKVAEQPAVVAEALDATEVQDDERVQVMPRRKPRQLNQKVRVD
DNRQPMPAEASDFVQPAEVRQPQPAEVAQPQPEFQAQQSDEQDDSDNRDNANMPRRSRRS
PRHLRVSGQRRRRYRDERYPTQSAMPLAAAAASPEMASGKVWIRYPVSQASEEQVQNVTH
QTPAYSAEETAVATHALPVAAAVESGVQDAPVQHAEPQAETPVPVVNTDDTRAIDAPVDE
QPSVVPAADEVKADAVAAEAVPAEPITEAPVMTPAVETVQPAEVSQSSEVEQPADVTEQS
ATDVSEEIAAEVEEVLNAPVAAEAETAPVREPHAPVAARDIAPAEPVKATEPAVSLPADA
SVPAAAAVPNDGTRWKHFASSPMTKAPAPVWQSEPAPHSDWVRAPYEFDGRGSAGAHSAT
HQATAPATKP
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaataaacgcaactcagcaggaggagttgcgcgttgccctggttgac
ggtcagcgtctgtacgatctggatattgaaagtcctggacacgaacagaaaaaagccaac
atctacaaaggtaaaatcacgcgcattgaacccagccttgaagctgcgtttgtcgattac
ggcgcagagcgtcacggtttcctcccgttaaaagaaatctcccgcgaatacttcccctcc
agctataacgcgcatggtcgtccgaatattaaagacgtactgcgtgaaggccaggaagtt
attgttcagattgataaagaagaacgcggcaacaaaggcgctgcgctgaccacctttatc
tctctggcgggcagctacctggtcctgatgccgaataacccacgtgcaggcggtatctct
cgccgcatcgaaggtgacgaccgtaccgaattaaaagaagcgctgtcggcgcttgacctg
ccggaaggcatgggactgattgtccgcaccgccggcgtaggcaaatcggccgaatcgctg
cagtgggatttaagcttccgtcttaagcattgggaagcgatcaagaaagccgctgaaaac
cgtcctgctccgttcctgatccatcaggagagtaacgtgattgtccgcgctttccgcgac
tatctgcgtcaggacatcggtgaaattcttatcgataatccaaaggttctggaactggcg
cgtcagcatattgctgcgctgggccgtccggacttcagcagcaaaattaagctctacacc
ggtgaaatcccgctgttcagccattatcagattgagtcgcaaatcgaatccgctttccag
cgtgaagtccgcctgccttccggtggctcgattgtcatcgacagcactgaagcgctgacc
gcgatcgatatcaactcagcacgcgcaacgcgcggcggtgacatcgaagagacggcgttc
aacactaaccttgaagccgctgacgagatcgcccgtcagctgcgcctgcgtgacctgggc
ggcctgatcgttatcgactatatcgatatgacgccggtacgccatcagcgcgcagttgaa
aaccgtcttcgcgaagctgttcgtcaggaccgcgcccgtattcagatcagccacatttcg
cgtttcggcctgctggagatgtcccgtcagcgcctgagcccatcattaggtgaatccagt
catcacgtttgcccacgctgtagcggcaccggcaccatccgtgataacgagtcacttgct
ttgtcgattctgcgtctgattgaagaagaagcactgaaagacaacaccaaagaagttcac
gctattgttccggttcaggttgcctcctacctgctgaacgaaaaacgtgaagcggtcaac
gcgattgaaaaacgccagggcggcgtgcgggcaatcatcgttcctgatgacaagatgcag
accccgcactactccgtgctgcgcgtacgtaaaggcgaagagacccagaccctgagctat
catctgccgaagctgcacgaagccgaaatggcgatgccgtcggaagaagagcatgcagag
cgtcgtcgtcctgagcagcctgctctggccgcgtttgtgatgcctgatgcaccgccggct
ccggtagaagttgagccggaagcgcagcgtgctgaagctcagccagcggcaaaagctaaa
cctgcggtggctgcacctgcgacggccagcaccggtttcttcgggcgtctgcttggcggc
ctgaaaaaaatgtttgccagcgaagaagcgcctgctgctaaacctgtgaccgctgaggtt
gctgaaccgcaaaaagcgcctgaaggtgagcaggaaaacaacaacggtcgtggcgaacga
cgcagcaacaataacaaccgtcgcaataacaatcgtcgtgagcgtacgccgcgtaacggg
gataacgcacagtcgcgtgagggccgtgagcctcgcgaaagtcgtgaaccgcgtgagagc
cgtgaaccgcgcgaaagccgcgagccacgtgaaaatcgtgagccgcgcgagggcaataat
aacaaccgccgcaacaagcgtgagtctcagtcaggtgaagtacgcgaagagcgtccggca
ctgagcgaagaagcgcgccagcagcgtgatgagcagcagcaacagcgccgtgaacagcgc
gctgaacgtcagcgtcgtcgtcaggaagagaaacgcgccggtgaagaagccgccaaagta
gctgagcagccagcagtggtcgcagaagccctggacgcgaccgaggtgcaggatgatgag
cgcgtacaggttatgccgcgtcgtaagccgcgtcagctgaaccagaaggtgcgtgttgat
gataatcgtcaacctatgccagccgaagccagcgactttgtccagcctgccgaagtgcgt
cagcctcagccagctgaagttgcacagccgcagcctgagttccaggcgcagcagagtgac
gaacaggatgacagcgacaaccgtgataacgccaatatgccacgtcgctcacgtcgttcg
ccacgccatctgcgtgtgagcggacagcgtcgtcgtcgttaccgtgatgagcgttacccg
acgcagtcagccatgcctctggccgcagcagcagcgtctcccgagatggcctctggtaaa
gtctggattcgctatccggtgagccaggccagcgaagagcaggtgcagaatgtgacacac
cagacacccgcgtacagcgcggaagaaacagcagtggctacccatgcactgcccgtggct
gccgctgtggaatcgggtgtgcaggacgcgccagtgcagcatgctgagccgcaggcagaa
acgccagtgccggtcgtcaacactgatgatacccgtgctattgacgccccggttgacgaa
cagccttctgtggttccggctgccgatgaagtgaaagcagacgctgtcgcggctgaagcc
gtgcctgctgaacccatcactgaagcgccggttatgacacctgctgttgagacggtacag
cctgcagaggtttcacaatcatcagaggttgaacagcctgcggacgttactgagcagtca
gccactgatgtcagtgaagagatcgcagccgaggttgaagaagtgctgaatgcaccagtc
gcagcagaggctgaaacagcaccggttcgtgaacctcatgctccggttgctgcacgtgat
atcgcgccggcggaacctgtgaaggcgaccgaacctgcagtgtcattgcctgccgacgca
tctgtgccagcagctgcagctgtaccgaacgacggtacacgctggaagcattttgcttct
tcgccaatgaccaaagcgcctgcgccagtctggcagtcagaaccggctccgcacagtgat
tgggtgcgtgcaccgtatgagttcgacggtcgcggttctgcaggagcgcatagcgccacc
catcaggccactgcaccggcaaccaagccgtaa
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