Pantoea sp. MT58: IAI47_15620
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Entry
IAI47_15620 CDS
T10894
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pamt Pantoea sp. MT58
Brite
KEGG Orthology (KO) [BR:
pamt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pamt03019
]
IAI47_15620 (hrpB)
Enzymes [BR:
pamt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IAI47_15620 (hrpB)
Messenger RNA biogenesis [BR:
pamt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IAI47_15620 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_22
HA2_N
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
QNQ58119
LinkDB
All DBs
Position
complement(3294339..3296822)
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AA seq
827 aa
AA seq
DB search
MRAILAQAEAEFAVSDLPVSVVLPDILAALRDASQILLAAPTGAGKSTWLPLQLLQHAAL
PGRIIMLEPRRLAARNVAQRLAEQLGEQPGATVGFRMRGESCVGPQTRLEVVTEGMLTRM
LQHDPMLEGVSLVILDEFHERSLQADLALALLLDVQQGLREDLKIMLMSATLDNARLAAL
LPDAPFIVSEGRSYPVERRYASLNPNVRFEEAVAREVAQLLRDEAGSLLLFLPGVAEIER
VKRELESRISDDVDLTPLYGALPLAAQRRAILPAAAGRRKVVLATNIAETSLTIEGIRLV
VDSALERSALFDARSGVTRLQTQRISQASMIQRAGRAGRLMPGLCLHLLPQEQASRAAAQ
SEPEIVNSDLSSLWLDLLQWGCTEPHQLQWLDQPPARNLDAAKQQLTRLGALDSNGLLNT
LGRRMAQLGCDPRLAAMLCAAGDEPDAVASAALLVAILEDPPRSGSADLRDALHRPQSPW
QRRAQQWQQRLKIRGGRVDEDRFAYLLAVGFGDRLARRRDQSGRYQLANGLGARLDEQDG
LTRNEWLIAPALLQGSTTPDARMLLALPVDIETLCQQQPALIERRTEVEWDEEKGTLRAF
RREQIGALILKTQPMARPEPAVLHAAMLRWIAEKGLSVLGWTPDAEQLRLRIQCAAQWLP
EESWPATDDESLLKILPQWLLPQMSAVRDLRSLQAVNLTTALLHLLTWSQRQRLDTVLPT
HYTVPTGSRLPIRYDADKPPALAVRIQEMFGEATNPAVAEGRIPLVLELLSPAQRPLQIT
RDLAAFWRGAWPEVRKEMKGRYPKHPWPEDPANALPTRRTKKMSPQG
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccatcttagcacaggcagaagcggagtttgctgtgagcgatttaccggtcagc
gtggtgctgcctgacatcctggcggcgctgcgtgacgcctctcaaatcctgctggccgcg
cccaccggcgcgggaaaatcgacctggctgcccttgcagttactacagcatgcagccttg
ccgggacgaatcattatgctggagccacgccggctggcggcgcgtaatgtcgcgcagcgg
ctggcggagcagctcggtgagcagccgggagccacggtggggttcaggatgcgtggcgaa
agctgcgtcgggccacagacccggcttgaagtggtgaccgaaggcatgctcacgcgcatg
cttcagcacgatccgatgctggagggcgtgtcgctggtgatccttgatgagtttcacgag
cgcagcctgcaggccgatctggcgctggcgctgctgctcgatgtgcagcaggggctgcgc
gaagaccttaaaatcatgctgatgtccgccacgctggataatgcccggctggcggcgctg
ctgccggacgcgccattcattgtctcagaagggcgcagctatccggttgagcgacgttac
gcgtcgctgaatccgaacgtgcgttttgaagaggcggtcgcgcgtgaagtcgcccagctg
ctgcgcgatgaagccggatcacttctgctgtttctgccgggcgtggcggaaattgaacgg
gtgaaacgcgaactggaatcacgcatcagcgacgacgtggacctgacaccgctctatggg
gcactgccgctggcggcgcagcgccgggcgatacttcccgctgctgccggacgccgcaaa
gtggtgcttgccaccaatatcgctgagaccagcctgaccattgaggggatccggctggtg
gtcgacagcgcgcttgagcgcagcgctctgtttgacgcccgcagcggcgtgacgcggctg
cagacccagcgaatcagccaggcatccatgatccagcgtgcaggtcgcgccgggcgactg
atgccgggactctgtctgcatctgttaccgcaggagcaggcatcccgtgcggcggcgcag
agcgaaccggaaattgtgaacagcgatctctcgtcgctgtggctggatctgctgcagtgg
ggctgtaccgagccgcaccagttacagtggctggatcagccgcccgccagaaatctggat
gccgcaaaacagcagctgactcgcctgggtgcgctggacagcaacggcctgctcaacacg
ctgggacggcgcatggcgcagctgggctgcgatccccgactggctgctatgctctgtgcc
gcaggcgatgaaccggatgcggttgccagcgccgcgctgctggtggcgattctggaagat
cctccgcgtagcggcagtgccgatctgcgggatgccctgcatcggccacagtctccatgg
cagcgacgcgcgcagcagtggcagcaacgactcaaaattcgtggcggacgggtcgatgaa
gatcgtttcgcctacttgctggcggtgggctttggcgatcggctggcgcggcgacgtgac
cagagtggccgttatcaactggccaacggcctgggtgccagactggatgagcaggatggc
ctgacacgcaatgaatggctgattgcgcctgctctattacagggcagtaccacgccggat
gcccggatgttgctggcgctaccggtcgacattgagacgttgtgccagcagcagcccgca
ttgattgagcgccgcactgaagtggagtgggacgaagagaaaggcacactgcgcgcgttc
agacgcgagcagattggcgcgctgatactgaagacacagccgatggcgcgcccggaaccg
gcggtgctgcacgcagccatgttgcgctggattgccgaaaaaggtctgtcagtgctgggc
tggacgccggatgccgaacagctgcgcctgcgcatccagtgtgcggcgcagtggttgccg
gaagagagctggcccgccacagacgatgagagcctgcttaagatcctgccacagtggcta
ttgccgcagatgtcagcagtgcgcgatctccgcagcctgcaggcggtgaacctgacgacg
gcactcttacatttactcacatggtcgcaacgtcagcggctggatactgtgctgccaact
cattacactgtgccgaccggaagccggctgccgatccgctatgatgcggacaagccgccc
gcgctggcggtcaggattcaggagatgtttggtgaggcgacgaatcctgccgtggcggaa
ggacgtattccgctggtgctggagctgttatcgcccgcccagcgcccattgcagatcacc
cgcgatttggcggcgttctggcgcggtgcctggcctgaagtcaggaaagagatgaagggg
cgttatcctaaacatccctggccagaggatccggccaatgccttgccaacaaggcgaacc
aaaaaaatgtccccgcagggttga
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