Paenibacillus amylolyticus: P9222_04360
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Entry
P9222_04360 CDS
T09036
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pamy
Paenibacillus amylolyticus
Pathway
pamy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pamy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P9222_04360 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pamy03019
]
P9222_04360 (rnr)
03016 Transfer RNA biogenesis [BR:
pamy03016
]
P9222_04360 (rnr)
Enzymes [BR:
pamy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
P9222_04360 (rnr)
Messenger RNA biogenesis [BR:
pamy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P9222_04360 (rnr)
Transfer RNA biogenesis [BR:
pamy03016
]
Prokaryotic type
tRNA degradation factors
P9222_04360 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
WFR63561
LinkDB
All DBs
Position
complement(865621..868416)
Genome browser
AA seq
931 aa
AA seq
DB search
MITEQQLLDFMRETAYKPMTYQELEQHFAIEDAADFKAFLIMLNSLEESGKVLLTRNNRY
GMPERMDLVRGRLQAHAKGFAFLIPEDREHPDVYIHANDMKSAMNGDTVLVKVTSQGPSG
GRLEGEIVRIVTRAVTQVVGVFQSHEVYGFVIPDDKRINRDIFIPRTNFAGAVDGQKVVA
KIVSYPEGRAAAEGEVIEILGHKDEPGIDILSVIRKHQLPEAFPDEVVEEAEKAPDSITD
EEIVQQGRRDLRGLNIVTIDGEDAKDLDDAVNVEKLPNGNYRLGVHIADVGYYVQENSKL
DQEAYNRGCSVYLVDRVIPMLPQRLSNGICSLNPQVDRLTLSCEMEFNDQMKVVKHDIFT
SVIKTKERMTYSNVRKILEGEEPELLERYKDLVDDFHLMKEIALKLRAMRMRRGAVDFDF
EESKIIVDAECKPIDIVKRERSIAEQIIEEFMLAANETVAEHFHWLKVPFIYRVHEDPDQ
EKLQNFLAFAANFGHQVKGRGNAIHPRALQSLLEDIKETKEQTVISTMMLRSMKQAKYDS
EMSGHFGLAAEFYSHFTSPIRRYPDLVIHRVIREVIENNGALPENRQEYLAARMADIAQQ
SSERERVAVEAERDTEKMKKAEYMLDKVGEEFEGMISSVTSFGMFIELENTVEGLIRLSA
LTDDYYHFDDQHMALIGERTSKVFRIGDEVKIRVARVSMEEYTIDFEMVDMKPRAERPGG
FGGGRGGKGGRPGNGGGRGGAKGGFSGSRGGKGGSAGAGGNRGGRSPEESSKGKGGRGGR
GGAASAGAGAGSSGGYGGKGGGKPKGERRAGDAGESTSRGKGAVSFGFGSGKGGYSSTTS
SGSDSRSTSGQGSGPSGGSTRGEGSFKSGKGGGKGGKGGSGRKKTSPSGVFIGEAATPGG
TQEGGAPRRKRKKSKGGAGNGTAAFVRKKKK
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgataacagaacaacaattgctcgacttcatgcgggaaaccgcttataaaccgatgact
tatcaggagttggaacagcacttcgccatcgaagacgcagctgatttcaaagcctttttg
attatgcttaattcgctggaggaatccggcaaagttttgctgacccgcaacaatcgctat
ggcatgccagagcgcatggatttggttcgcggacgtttacaggctcacgccaaaggcttt
gctttcctcattcctgaggatcgggagcacccggatgtgtacattcacgccaatgatatg
aagagtgcgatgaatggtgacacggtattggttaaagtcacgtcccaaggcccttctggg
ggtcgcctggaaggtgagatcgtccgtattgttactcgtgcagtgacacaagttgtcggt
gtgttccaaagccatgaggtgtacggcttcgtcattccggatgacaaacggattaatcgc
gatattttcattccgcgtaccaactttgcaggggcggttgatgggcagaaggttgtggca
aagatcgtcagctatccagaaggccgtgcggcagcagagggtgaagtgattgaaattctc
ggtcataaggatgagccgggtattgacatattgtccgtgatccgcaagcatcagctacct
gaagctttcccggatgaagtcgtagaagaagcggagaaagcacccgactccatcacggat
gaagagattgtacaacagggtcgccgtgatctgcgcggacttaacattgtcacgattgat
ggtgaagatgccaaggatctggacgatgctgtaaatgtagagaaactgcctaacgggaat
taccgtctgggtgttcatatcgccgatgttggatattatgtacaggagaattccaagctg
gatcaggaagcctacaaccgtggatgcagtgtgtatctggtggaccgggttattccgatg
ctgccacagcgtctgtccaacgggatctgtagtttgaacccgcaggtggatcgtctaacc
ctgtcttgtgagatggagtttaacgaccagatgaaggttgtaaaacatgacattttcaca
agtgtaatcaaaaccaaagagcggatgacgtattccaacgtccgtaaaatccttgaaggt
gaagagcctgaattgctcgagcgttataaggatctggtcgatgatttccatctgatgaaa
gaaattgcgttgaagctgcgagcgatgcgtatgcgtcgtggagcggttgactttgacttt
gaagaatccaaaattattgtggatgcagagtgcaaaccgatcgatatcgtaaaacgggag
cgctcgattgcagagcaaatcattgaggaattcatgttggcggcgaacgaaaccgtggca
gagcatttccactggttgaaggttccgttcatttatcgtgtgcacgaagacccggatcag
gaaaaactgcagaatttcctcgcctttgcggcgaattttggacatcaggtcaaaggacgt
ggcaatgcgattcatccacgggcgctccaatcgctgcttgaggatatcaaagaaaccaaa
gaacaaaccgtgatcagcacaatgatgcttcgttccatgaaacaggcgaagtatgattct
gaaatgtcaggtcactttggcctcgcggcagaattctatagtcactttacatctccaatt
cgtcgttaccccgatctcgtcattcaccgggtgattcgcgaagtgattgaaaataatggt
gctttgccagagaatcgtcaggagtatttggcagcccgcatggccgatattgcacagcag
tcttcggaacgtgaacgtgtggcggttgaagctgagcgagatacagagaaaatgaaaaaa
gccgagtacatgcttgataaagttggcgaagagttcgaaggcatgatcagcagtgtgacc
agcttcggtatgttcattgaactggagaacacggttgaaggtctgattcgcctgagtgcg
ctcacggacgactattaccattttgacgatcagcatatggctctgattggtgaacgtacc
tcaaaagtcttccgtatcggggatgaagtgaagatccgtgtggcacgtgtcagcatggaa
gagtatacgattgattttgaaatggtggatatgaaacctcgcgctgaacgtcctggcggc
ttcggtggcggacgtggcggcaaaggtggacgtcctggtaacggcggcggacgcggtggt
gccaagggtggattcagcggatcacgtggcggcaaaggcggctcagctggcgctgggggc
aaccgtggtggcagatcaccggaagagagcagcaaaggcaaaggtggacgtggcggtcgc
ggcggagcagcgagtgcaggtgcgggagcaggctcatccggtggctacggaggtaaaggc
ggcggcaaaccgaaaggtgagcgtcgtgcgggtgatgctggcgaatcgactagtcggggc
aaaggcgcggtaagttttggttttggctctggtaaaggtggttatagctctactacatca
agtggttcggatagtcgttcaaccagtggacaaggaagtggccctagcggcggcagtact
cgcggtgaaggaagctttaagtccggcaagggcggcggtaaaggtggcaaaggtggaagt
ggacgtaaaaaaacttcgccgagcggcgtatttatcggagaagctgcaacaccgggcggc
actcaggaaggcggagcaccacgacgcaagcggaagaagagcaaaggtggagctggtaac
ggtacagcagcttttgtacggaaaaagaaaaagtaa
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