Paenibacillus amylolyticus: P9222_05100
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Entry
P9222_05100 CDS
T09036
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pamy
Paenibacillus amylolyticus
Pathway
pamy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pamy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P9222_05100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamy03400
]
P9222_05100 (mfd)
Enzymes [BR:
pamy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P9222_05100 (mfd)
DNA repair and recombination proteins [BR:
pamy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P9222_05100 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_30
RecG_dom3_C
AAA_22
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WFR63666
LinkDB
All DBs
Position
complement(1012988..1016515)
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIQAFSKDPDFGSITAGIKSGMKEQLVSGLSGSARQIMLAALHQEMNRPLLVVTHN
MFSAQKIAEDLQEALSPDQVLIYPANELVAAEAAVSSPETLGQRIEVLVRCAQGFRGVVV
IPFSGVRRYVPLPEVMANARILIKQGNTLQLDAFLLEMVKLGYERVERVESRGELSVRGG
IIDFYPVTSSIAYRVELFDDEIDSIRTFDPADQRSIERIEEITVLPCKELIADRERMEKA
ADAAALLLEQQLEKMTDRQAKLRLREEIHREIELLREHVYFSEMYKYISPLYPENKTIYD
YMPEDTLLVLDEPARLSETSKQLDRDESEWNLHLMQNGKTLPDLPLSADGDELLYERPFQ
TLFMSIFLRQVPHTQPQNILNFISRGMQDFHGQMNVLKAEMERWQKAGVQVLMLANGEER
LERMRRVLMDYDIPEPEMMIGNLQTGFEMPSIHLAVVTEGEMFSQKQRKVRKPIRNVDNA
ERIKSYSELKVGDYVVHQNHGIGKYLGIGTLEVGGIHKDYMHILYAGGDKLSVPIEQIDL
IQKYVGSEEKEPKIYKLGGNEWTRVKNKVRTSVQDIADDLIKLYAERQTSKGFGFDKDSA
EQQEFEDMFPYDETRDQVRAIEEIKKDMEQNRPMDRLLCGDVGYGKTEVAIRAAFKAAIE
GKQVAVLVPTTILAQQHFETFRERFSGYPFNIHVLSRFRSRKEQNETAKGIKAGTVDIVI
GTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQALVREAIERELARGGQVYYLYNRVQGIQEMAAE
ISDLVPEAKVGVGHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINKRKVTMLGEEPVPSDQWNTTLDLS
IDAYLPSDYIYDSIQKIEIYKKVAVIASFDDAMELEDELVDRFGDLPEAVINLLAVARMK
VYGKIYGIESISQRGEDITVKFYEGREHAFELSKIAHIGNQFERRVQFEQGPHMLIHAKG
KGLGDKQLMELVEKILESMKTAFKSKGELKDVSKV
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcacttatacaggctttttccaaagatccggacttcggatccattacagcc
ggaatcaagtccggcatgaaggaacaattggtttcgggtctatccggctcggcgcgtcag
attatgctggctgctctgcatcaggaaatgaaccgaccattgctcgtagtaacgcacaat
atgttttcagctcaaaaaattgcagaagatttacaggaagcgctttcacctgatcaggta
ttgatctatcctgccaacgaacttgttgctgctgaagccgctgtttccagcccggaaacc
ttgggtcagcgcatcgaggtgttggtccgctgcgcccaaggattcaggggcgttgttgtt
attcctttttccggggtaagacgttatgttccgcttccggaagtgatggccaatgctcgt
attttgattaaacaaggcaacacacttcaactggacgccttcctgctggagatggtaaag
ctcggatatgagcgagtggagcgtgtggaatctcgtggtgagttgagtgtacgcggaggg
atcatcgacttctatccggttacttcatcgattgcgtatcgggtggagttatttgatgat
gagatcgactccattcggacattcgacccagccgatcagcgttcaattgaacgaattgaa
gagattaccgttttgccatgcaaggaattaattgcagaccgcgagcgaatggaaaaggct
gctgacgcggctgctcttttgctcgaacaacagctggagaaaatgacggaccggcaggcg
aagctgcgtcttcgtgaagaaattcaccgggagattgagcttttgcgggagcacgtgtat
ttctccgaaatgtacaaatatatttctccgctctatccggagaataaaacgatttacgac
tatatgcccgaagataccctgcttgtcctagatgagcctgccagactttcggagacatcg
aaacagctggaccgtgatgaatcggagtggaatctgcacttgatgcaaaacggaaaaaca
cttccggatcttccattatccgcagacggtgatgaactgttgtatgagcgtccattccag
acgctgttcatgtcgatctttttgcggcaggttccacacacccaaccacagaacattctg
aacttcatcagtcgtggcatgcaggatttccatgggcagatgaatgtactgaaggcagag
atggaacgctggcagaaggctggagttcaagtgctcatgctggcgaacggtgaggagcga
ctcgagcggatgcgccgggtactgatggactatgatattccagagccagagatgatgatc
ggtaacctgcaaacgggttttgaaatgccgtccattcatttggctgtcgtgaccgagggc
gagatgttctcgcaaaaacagcgtaaagtacgcaaaccgattcgaaatgtagacaatgcg
gaacggatcaaatcctatagtgagctaaaagtgggcgattatgtcgttcaccagaaccac
gggattggtaagtaccttgggatcggtaccctcgaagttggcggcattcataaagactat
atgcatattctctatgcgggtggagacaaactgtctgtacctattgagcagatcgatctg
attcagaaatatgttggttccgaagagaaagaaccgaaaatatacaagctgggcggcaat
gagtggacacgggttaaaaataaggtccgcacatccgtacaggatattgctgatgatctg
atcaagctgtatgcagaacgtcagacctccaaagggtttggattcgacaaggattctgca
gagcagcaggagtttgaggacatgttcccttacgatgagactcgtgatcaggtacgtgcc
atcgaagaaatcaagaaggacatggaacaaaaccgtccaatggaccgtttattgtgtggg
gatgtgggttacggcaaaacagaggtagctattcgggctgcatttaaagcggctattgaa
ggcaaacaggtggctgtcctcgttccaacaacgattttggcacagcagcattttgagacg
ttccgtgagcggttctccggttatcccttcaacattcatgtgcttagccggttccgctcc
cgtaaagagcagaatgaaacagccaaaggcatcaaggcaggcacagtggatatcgtcatc
gggacgcatcgattgctgtcgcaggatctggtgttcaaggacctgggactgctcattgtt
gatgaagaacagcgctttggagtcacccataaggagaaactgaagaagctgaaaaccaat
gtggacgtgctgacgctgacggcaacgccgattccgcgtacacttcatatgtccatgctg
ggtgtgcgtgatctgtccgttattgagactccgccagagaatcgtttcccggtacagacc
tatgtcgttgaacacagccaggcgcttgtccgtgaagccattgagcgtgagcttgctcgc
ggtgggcaagtgtattacctctacaaccgtgttcagggaattcaggagatggctgctgag
atttctgaccttgtgcctgaagccaaggttggtgtgggacatggccagatgtcggaaaca
gagctggagaagacgattctggacttcctggatggtgaatatgacgtgcttgtgagcaca
agtatcatcgagaccggggtagatattccgaatgtaaatacactgatcgtacatgatgcg
gataaaatggggctctcccagctgtatcagctgcgcgggcgtgtgggtcgttccaatcgt
attgcgtatgcctattttacgtaccaacgggacaaagtacttacggaagttgcagagaag
cgcctgcaatccatcaaagaatttaccgaactgggttcgggattcaagatcgccatgcgc
gacttgtcgattcgtggtgcgggaaatctgctgggggcagagcagcatggcttcatcgct
tctgtcgggttcgacctgtattcccagatgcttgcggaggagatcaacaaacgcaaagtt
acgatgcttggcgaagaaccggtaccttccgaccagtggaacacaaccctggatctcagt
atcgatgcctacttgccgtccgattatatctatgacagtattcagaagatcgagatctac
aaaaaagtggcggtcattgcatccttcgacgatgcgatggagctggaagacgaattggtt
gaccgattcggtgatcttccggaggccgttatcaacttgctggctgttgcgcggatgaaa
gtatacggcaaaatctacggtattgaatccatttcccaacgtggtgaggacattaccgtg
aagttctatgaaggccgtgaacatgcctttgaactctcgaaaatcgcgcacattggaaat
cagttcgaaagacgtgtacaatttgaacaaggaccccatatgctgattcacgctaaaggc
aaggggcttggggataagcaactgatggagctggtagagaaaattctggagtccatgaag
actgcttttaaatcaaagggggaactaaaagatgttagcaaagtataa
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