Paenibacillus amylolyticus: P9222_09730
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Entry
P9222_09730 CDS
T09036
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pamy
Paenibacillus amylolyticus
Pathway
pamy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pamy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P9222_09730 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pamy03021
]
P9222_09730 (rpoC)
03400 DNA repair and recombination proteins [BR:
pamy03400
]
P9222_09730 (rpoC)
Enzymes [BR:
pamy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P9222_09730 (rpoC)
Transcription machinery [BR:
pamy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P9222_09730 (rpoC)
DNA repair and recombination proteins [BR:
pamy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P9222_09730 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WFR64402
LinkDB
All DBs
Position
1978847..1982461
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DLDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNNPEWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKD
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGSYYLTMDNKEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP
VKALGKTSFTEEQQEGMLLTTIGKIIFNEIFPASFPYINDATRANLYQGTADHSFVYEKG
ADLREAIMNAPLAGGVGKEYLGSIIARCFEIYHTTETAVILDKIKQLGFTYSTRAGITVA
VSDVIVPPEKFEILRQSEDKAQIVTNQYRRGLITNEERYDRIIDIWSKSKDDITDILMKS
MDRYNSIMMMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVRDDDCGTDKGFTVSRIQDGKEVIEDL
YDRIEGRYCFETVRHPETKEIIAGRNELIDSDKAEAIIKAGVTKLQIRSVLSCRASHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEIREAKDRREIEIQGEAESKVYSVTYGSRVRVSEGMEIEA
GDELTDGSIDPKEMLRIKGVRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
VDAGDTTLLPGSFVDTHEYERANKIAILSDKEPAVAKPILLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRSIKFAEPEDGQSSVEELEP
VSVD
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtcaacaatttcgaatacatgaagatcgggcttgcttccccagagaaaatt
cgttcttggtcccgcggagaagtgaaaaaaccggaaacgatcaactatcgtacgttgaaa
ccggaaaaagaagggctgttctgcgaaaagatttttggccctacaaaagactgggaatgt
cattgcggtaaatacaaacgcgtccgttataaaggcgttgtctgtgatcgttgtggcgtt
gaagtaacacgtgcgaaagtgcgccgcgaacggatgggccatattgagctcgctgctccg
gtatcgcatatctggtacttcaaaggtattccgagccgtatgggtcttgctctggatatg
tctccaagatctcttgaagagattatttattttgcatcatatgttgtaactgatccagga
gaaactccactggagaaaaaacagctgttgtccgagaaagaataccgcagctaccgtgaa
aaatacggatatggtttccaggctggcatgggcgcagaagcggttaaaaaattgcttcaa
gaccttgacattgataaagagctcgagttcctgaaagaagagctccggactgcacaagga
caacgtcgtaatcgtgcaatcaagcgtctggaagttatcgaagcattccgcaactccggc
aacaatccagagtggatgatcatggatgtactccctgttatcccgccggaacttcgtcca
atggtacagttggacggtggacgttttgcaacgtctgacctgaatgacttgtatcgccgt
gtaatcaaccggaacaatcgtctgaaacgtctacttgatctgggcgcgccagatattatc
gtgcaaaatgaaaaacggatgttgcaggaagctgtcgacgcattgatcgataatggtcgt
cgtggacgcccagtaacgggtcctggtaaccgtccattgaaatccctcagccacatgctg
aaaggtaaacaaggacgtttccgtcagaacttgctcggtaaacgggttgactattctggt
cgttccgttatcgttgtcggaccttacctgaaaatgtatcagtgtggtctgccaaaagat
atggcacttgaattgtttaagcctttcgttatgaaagagcttgtaaataaagggcttgcc
cacaacatcaagagcgcgaaacgtaaagttgagcgtgtaagtcctgaagtatgggatgtt
cttgaagaagtaatcaaggagcatccggttctgttgaaccgtgcccctacgcttcacaga
ctcggtattcaagcatttgaaccgattcttgttgaaggtaaagcaattcgtcttcacccg
ctcgtatgtacggcatacaatgccgactttgacggtgaccaaatggccgtgcacgttccg
ttgtccgctgaagctcaagcggaagcacgtatcctgatgcttgcatcaggtaacattttg
aacccgaaagacggtaaaccggttgttactccttcccaggatatggtgcttggttcttat
tacctcactatggacaacaaggaagaaaagggcactggtatgatcctgcgtacagttaac
gaggctgtatcagcttaccaacgtggtactgctggtctgcatgcgcgtgtagctattccg
gttaaggcgcttggtaaaacaagctttacggaagagcagcaagaaggaatgttgttgaca
acgatcggtaaaattatttttaatgaaattttcccggcaagcttcccgtatatcaatgac
gcgactcgtgcgaacctctaccaaggtacggcagatcactcatttgtatatgaaaaaggt
gctgatctcagagaagctattatgaatgctcctctggctggcggtgtcggcaaagaatac
ctcggctccatcattgcacgttgttttgaaatttatcacacaacggaaacagccgttatt
ttggataaaatcaaacaacttggattcacatattctactcgtgccggtattacggttgcg
gtatctgatgttatcgttccgcctgagaaatttgaaattctcagacagtccgaagataaa
gcacaaatcgttacgaatcagtaccgtcgtggtctgattacgaatgaagagcgctatgac
cgtatcattgatatctggtcaaaatccaaagatgacatcacggatatcctgatgaaatcc
atggaccgttacaattccatcatgatgatggtagactccaaagcacggggtaacaaatcg
caaatcacccaattgggcggtatgcgtggtctgatggccaacccatccggtcggattatc
gaactcccaatcaaatcgaacttccgtgaaggtctgacagtactcgagtactttatctcc
actcacggagcgcgtaaaggtctggcggatacagccctgcgtacagccgattcaggttac
ctgactcgtcgtctcgtagacgtagcccaagacgtaatcgtgcgtgatgatgattgtggt
accgataaaggctttacggtaagtcgtatccaggatggtaaagaggttattgaagatctc
tacgaccgtattgaaggcagatactgcttcgagacagttcgtcatccggaaaccaaagaa
atcattgcaggtcgcaatgaattgattgactccgataaagcagaggcaatcatcaaagcg
ggcgtgaccaaattgcaaattcgctccgtactcagctgccgtgcaagtcatggtgtctgc
aagaagtgttatggtcgtaaccttgcgactggtaaacacgtggagattggtgaagcagtt
ggtattattgcagcgcaatccattggtgagccaggaacacagcttacaatgcgtacgttc
cacaccggcggtgtagccggagacgatattacgcaaggtttgccgcgtatccaggagttg
tttgaagctcgtaatcctaagggtcaagcaacaatcagtgagattgatggtgtggttaaa
gagattcgcgaagcgaaagatcgtcgtgaaatcgaaattcaaggtgaagcggagtccaaa
gtatactctgttacctacggttcccgtgtgcgcgtaagcgaaggcatggagattgaagct
ggtgacgagttgacagacggttccatcgatccaaaagaaatgctgcgcattaaaggcgta
cgtggcgtacaaaactacattttgcaggaagtacaacgcgtataccgtaaccaaggcgta
gaaatcaatgacaagcacgttgaagttatgatccgtcaaatgctgcgtaaaatccgcatc
gtagatgcaggagatacaacgctgttgccaggatcgttcgtagatacgcatgagtacgaa
agagctaacaaaattgcgattcttagtgataaagagccagcggttgctaaaccaatcctg
ctcggtattacaaaagcatccctggaaacagactccttcctctcagcggcttcgttccaa
gaaacgacacgtgttctgacagatgcagcgatcaaaggtaaagtcgatcagttgcttggt
ctgaaggaaaatgtaatcatcggtaaattgatccctgcgggtacaggcatgaaccgttac
cgcagtatcaaatttgctgagcctgaagatggccagtcttctgtagaagaactggaacca
gtttcggttgattaa
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integrated database retrieval system
