Paenibacillus amylolyticus: P9222_15420
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Entry
P9222_15420 CDS
T09036
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pamy
Paenibacillus amylolyticus
Pathway
pamy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pamy00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
P9222_15420 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pamy03021
]
P9222_15420 (rpoD)
Transcription machinery [BR:
pamy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
P9222_15420 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
HTH_20
BLOC1_2
Motif
Other DBs
NCBI-ProteinID:
WFR65244
LinkDB
All DBs
Position
3136983..3138122
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AA seq
379 aa
AA seq
DB search
MANDQHTELETELTLDQVKDQLIESGKKRASLNYKEIIEKLSPFEQDAEQMDEFYEQLSD
LGIDVVNENDEEVTLRPSEDSENNTREGEDEFHFDDDLSLPPGIKINDPVRMYLKEIGRV
PLLSADDEVQLAKRIENGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLI
KAVEKFDHKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQE
LGREPTPEEIAAEMDLSVEKVREITKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPAD
AAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK
ALRKLRHPSRSKRLKDFLE
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcagcatactgaactagaaacagaattgacactggatcaggttaaggat
caattgattgaatcaggtaagaaaagagcttcgctgaattacaaggaaattatagagaaa
ctctctccttttgagcaggatgcagagcaaatggatgagttctatgagcagctgagtgat
ctgggtatcgatgtagtgaatgagaatgatgaagaggttacactgcgtcctagtgaagat
tccgagaacaacacgagagagggagaggacgaattccactttgatgatgatctgagcttg
ccgccaggtatcaaaatcaatgaccctgtccgtatgtatctcaaggaaattggtcgtgtg
ccattgttgtcggcagatgatgaagtacaactggccaaacggattgaaaacggggatgaa
gaagccaagcgtcgtttggctgaagcgaacctgcgtctcgtagtcagtatcgccaagcgt
tacgttggacgtggcatgctgttccttgatttgattcaggaaggtaacatgggtctgatc
aaagcggttgagaagtttgaccacaaaaaaggatacaagttcagtacgtatgctacatgg
tggattcgccaggcgatcactcgtgctattgctgaccaggcgcgtacgattcgtattcct
gtacacatggtggagacgattaataagctgatccgggtatcccgtcagctgttgcaggaa
cttgggcgtgaaccaacaccagaagaaatcgctgctgagatggatctgagtgtcgaaaaa
gttcgtgaaattacgaagattgcacaggaaccggtttctctggaaacaccgatcggtgag
gaagatgattcccatctgggtgacttcatcgaggatcaggaagcacttgctccggcagat
gcggctgcgtatgagttgttgaaagaacaactcgaagatgtactggatacactgactgag
cgtgaagagaacgttcttcgtctgcgttttggtctggacgatggacggacgagaacgctg
gaggaagtgggcaaggtatttggtgttacgcgtgagcgtattcgtcagattgaagccaag
gctcttcgtaaattgcgccacccgagtcgtagtaaacgactcaaagatttcctcgaataa
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