Paenibacillus amylolyticus: P9222_22925
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Entry
P9222_22925 CDS
T09036
Symbol
helD
Name
(GenBank) RNA polymerase recycling motor HelD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pamy
Paenibacillus amylolyticus
Pathway
pamy03420
Nucleotide excision repair
pamy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pamy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P9222_22925 (helD)
03430 Mismatch repair
P9222_22925 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pamy03400
]
P9222_22925 (helD)
Enzymes [BR:
pamy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P9222_22925 (helD)
DNA repair and recombination proteins [BR:
pamy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P9222_22925 (helD)
MMR (mismatch excision repair)
Other MMR factors
P9222_22925 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
SLFN-g3_helicase
AAA_16
NACHT
DEAD
AAA_30
nSTAND3
ResIII
Motif
Other DBs
NCBI-ProteinID:
WFR61297
LinkDB
All DBs
Position
complement(4693159..4695576)
Genome browser
AA seq
805 aa
AA seq
DB search
MDKIVEWKLEEERLVQARNKLQARLEELEPKVAGLHEQAAEIRKRFWEEVTINTSSYTDF
EDAFYTINQQSRVLAERERGHKLLTQQWKNTKRLLPTPYFGRFDYKEKGMTFTEQIYIGV
SSFMDEEGLNFLIYDWRTPIASLYYDYSPGPAGYDTPSGRIEGKMELKRQFQIQHGQLLS
MFDSTETIGDELLQQVLAKGADSQMKSIVATIQKEQNAIIRDDRSRMLIVQGAAGSGKTS
AALQRVAYLLYKHRQTVKADQIVLFSPNPMFTSYTSTVLPELGEENMQQTTFQEYLNYWL
DSSLRPEDAFDQIEYVLTTQEDPGYEARLEAIKYKASENFLQVLQNYGMWLGREGMRFNG
IQFRGREFISSDRIKTHFYSLDPNLTLSNRILLVQEWLLRELVTLERQEREADWVQEELN
YLDTDEYVEAFGRLHKEKPVFDVAEKYAARDNGNHSAEQDEGAFNFAVREEELLRQKLVK
DMFKPLRKSVRRFQFVDVKGIYEQLFVNETAYREQTDGAIPPLHWSEICKQTKEMISQNK
LFHEDATPYLYVKELIEGVWTNTEIRYVFVDEGQDYSAFQYEYLKKLFPRARMTVLGDFG
QAIFMQATELAASNSPLVHLYGEADTTLIRLVRSYRSTKEIVEFTRHMLPGGEEIRPFER
GDQKPLLTRLKDDKLRAVQILVDIDSLKAEGFNSIAVITKTAAESREVHERLLSQGGEGL
QLITKDTQIFEKGIMVIPVYLAKGVEFDAVLIYDASPEAYSQEYDRKLLYTACTRAMHRL
QLYTTREWSPFVHALPANLYEIRSH
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggataaaatcgttgaatggaagttggaagaggaaagactggtgcaggcgaggaacaaa
cttcaggcaagactcgaagagttagaaccgaaggttgccggactgcatgaacaagctgcc
gaaattcgtaaacgcttctgggaagaagtgacgattaacacgagttcgtacacggatttt
gaagatgcattttacaccattaatcaacaatccagagtgttggcagagcgggagcgcggg
cacaagttgttaacacaacaatggaaaaatacgaagagactgcttccaacgccgtatttt
ggtcgcttcgactataaggaaaaaggcatgacatttactgaacagatctacattggcgta
tcatctttcatggatgaggagggtttgaactttctaatctatgactggagaacgccgatt
gcgagtctgtactatgattactctcccgggccggcaggttatgacacaccttcaggacga
attgagggaaagatggagctcaagcgtcaattccagatccaacatggacagttgcttagc
atgtttgattcaacggagacgattggtgacgagctgttgcagcaagtactcgccaagggt
gcagattcacagatgaagagcatcgttgcaaccattcagaaggaacaaaatgccattatt
cgtgatgatcgaagccgaatgcttatcgttcagggagcagcaggcagtggcaagacgtcc
gccgcgttacagcgagtggcctacttactatacaaacaccgccagactgtcaaagcagat
cagattgtacttttctcgccgaatccgatgtttaccagttatacgtccaccgtactcccg
gaacttggggaagagaatatgcagcagacgacgtttcaggagtatctcaattattggctg
gattcctccttgcgaccggaggatgcctttgatcagattgaatatgtactgacaacccag
gaagatccgggatatgaagctcgcctggaggcgatcaagtacaaggcttccgagaacttt
ctgcaagtactccagaactacggcatgtggctgggacgcgagggcatgcggttcaacggg
attcaatttcggggacgtgaattcatctcttcggaccgaatcaagacccatttctacagt
ttggatccaaatctgacattgtccaatcgtattcttcttgtgcaggaatggttgctgaga
gaactcgttacgctggaacgtcaggaacgggaagcagactgggttcaggaggagttgaat
tatctggacacagatgagtatgtggaagctttcggcagactgcacaaagaaaaacctgtg
tttgatgtggcagaaaaatatgcagcacgagataacggtaatcacagcgctgagcaagat
gagggtgcctttaactttgcagtgcgggaggaagaattgcttcgtcagaaactggtgaaa
gacatgttcaaacctttaagaaagagtgtgcgtagattccagttcgtcgatgtgaaaggg
atatatgaacaacttttcgtaaatgaaacagcatatcgagagcaaacggatggggcaatc
cccccgctgcactggtctgagatctgcaaacagaccaaggaaatgatttcgcagaacaag
ctgttccatgaggatgctactccttatttatatgtaaaagaactgattgaaggcgtctgg
acgaatacggagattcgttatgtcttcgtggatgaaggccaggattattcggcatttcaa
tatgaatatctcaagaaattgtttcctcgcgctcgcatgaccgtgctaggtgatttcggt
caagcgatctttatgcaggctacggagttagcagcatccaactcgccgttagtccacctg
tatggagaagccgacaccacattgatccgcctggtgcgcagttatcgttcaaccaaagag
attgttgaattcacgagacacatgttgccagggggagaagaaatcagaccttttgaaagg
ggagatcagaagcctcttttaacaaggttgaaggacgataagctgcgtgcggtacagatt
ctggtagacatcgactcgctcaaagcagaagggttcaattccatcgctgtaattacgaag
accgcggctgaaagccgggaagtccatgaaaggttattaagtcaagggggcgaaggctta
caacttataacgaaggatacgcagatttttgaaaaaggaattatggttattcctgtgtac
ctcgcgaaaggcgtcgagttcgatgctgtcctgatctatgatgcctcaccggaagcgtac
agccaggaatatgaccgcaagcttctgtatacggcctgcacacgggccatgcatcgactt
caactctacacaacgcgtgaatggtcaccgtttgtgcacgcattacctgcgaatttgtat
gagatcagatcccattga
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