Paenibacillus amylolyticus: P9222_23220
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Entry
P9222_23220 CDS
T09036
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pamy
Paenibacillus amylolyticus
Pathway
pamy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pamy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P9222_23220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pamy03019
]
P9222_23220
Enzymes [BR:
pamy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P9222_23220
Messenger RNA biogenesis [BR:
pamy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P9222_23220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
UTP25_NTPase-like
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WFR61346
LinkDB
All DBs
Position
complement(4749922..4751337)
Genome browser
AA seq
471 aa
AA seq
DB search
MTFKDLNIIPSILEGLSKANYTNPTPIQEQSIPAVLAGRDLLGCAQTGTGKTAAFSLPII
QLLSERSKGPKSARHIRSLILTPTRELAIQIADNIKIYSRYTDIRCTAIVGGVSQKVQER
ALNQGADIIIATPGRLNDLINQKRIDLKMVEILVLDEADRMLDMGFIHDVKRIIAKMPNK
KQTLFFSATMPPEITKMVKTLLVDPVKVEITPVSSTVDRIEQSIYLLENGKKQLMLNQIL
QDKSIATALVFTRTKRGADRVTRDLAKVNVTAQAIHGNKSQNERQRALNNFKSGATRVLV
ATDIAARGIDVEELSHVINFNLPNIPETYVHRIGRTGRAGKSGMAISFCEKDELPFLKDI
EKVIKKTIPEVKGHPYPMTGVPVFEKSSKASGSKPAFNKSAAGKPAKSKANPARKPKSEW
FAKSGKTSGSRSNEGRSNGSRPSSSRSNSSSSKSNQGSFNRSSKTRNDRAN
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaggacttgaatattatcccctccatactggaaggattaagcaaagcaaac
tataccaatcctacgcctatacaggaacagtctattccagctgtattagcgggcagagat
ctgctgggatgtgcacagacaggaacaggcaagacggcagctttttcgctaccgatcatt
caattattaagcgaaagatcgaaaggacccaagtccgcacgacatattcgctcattgatt
ttgacaccaactagagaactcgctattcagattgcagataacatcaagatatatagccgc
tatacggacattcgttgtacagctatcgttggcggtgtttcgcaaaaagtgcaggaacgt
gcgcttaatcaaggtgcagacattataatcgcaacacctggccgattgaacgatctgatt
aaccagaagcgtattgatctgaaaatggttgagattctcgttctggatgaagcagaccgg
atgttggatatgggcttcattcatgatgtgaaacgaattattgcgaagatgccgaacaaa
aagcagacgctgttcttctcagcgaccatgcctcctgagatcaccaaaatggttaagacc
ctgctggttgatccagtcaaagtagaaattacaccggtatcttcaaccgtagatcgcatc
gaacagtctatatatttgctggagaacggcaagaagcagcttatgcttaaccaaattctg
caggataaatccatcgccacggcattggtgttcacacgcacgaagcgcggcgctgaccgg
gttactcgtgatttggccaaagtgaatgttacagcacaggccattcatggtaacaagtct
cagaatgaacgacaacgtgcactgaacaatttcaagagtggggctacgcgagtactggta
gcaacggatatcgcggccagaggaattgacgttgaggaactgtcacatgttattaacttt
aaccttcctaacattccggaaacgtatgttcaccgtattggacgtacaggccgtgcgggc
aaaagcgggatggccatctcgttctgtgagaaggatgaacttccattcctgaaggatatc
gagaaggtaatcaagaagacgattcctgaagtaaaaggtcatccatatccgatgacgggt
gtacctgtgtttgagaaaagcagcaaagcatcaggcagtaaacctgctttcaacaaatcg
gctgcaggcaaaccggccaagtccaaggcgaacccggcacgcaagcccaaatccgagtgg
tttgccaagagtggcaaaacgagtggcagtcgttcaaacgaaggtagatccaatggcagt
agaccaagtagcagtagatctaacagcagtagcagtaaatcaaaccagggctcattcaat
cgcagcagcaaaacaagaaatgatcgagccaattaa
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