Podospora anserina: PODANSg6419
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Entry
PODANSg6419 CDS
T01048
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pan
Podospora anserina
Pathway
pan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PODANSg6419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pan03019
]
PODANSg6419
03041 Spliceosome [BR:
pan03041
]
PODANSg6419
03009 Ribosome biogenesis [BR:
pan03009
]
PODANSg6419
03016 Transfer RNA biogenesis [BR:
pan03016
]
PODANSg6419
Enzymes [BR:
pan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PODANSg6419
Messenger RNA biogenesis [BR:
pan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PODANSg6419
Spliceosome [BR:
pan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PODANSg6419
Complex C
U4/U6.U5 tri-SnRNP related factors
PODANSg6419
Ribosome biogenesis [BR:
pan03009
]
Eukaryotic type
Pre-60S particles
Helicases
PODANSg6419
Transfer RNA biogenesis [BR:
pan03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PODANSg6419
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
BRICHOS
AAA_16
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
6194216
NCBI-ProteinID:
XP_001909384
UniProt:
B2B0H8
LinkDB
All DBs
Position
3
AA seq
1082 aa
AA seq
DB search
MDDLFDVFEQQPRAPKKRKAPADQSQDVEMTDGTDHAASQADQSIKTEDASPAEEHHPQE
MSHGDMKRQKLEGEPEPAAPVMADSFQTAQSREVNAAAGFAPGEEGESIVLSHNIQHQVA
LPPDLDYEYIPLSEHKAPEEPARVYPFKLDPFQALSVASIERGESVLVSAHTSAGKTVVA
EYAIAQCLKRNQRVIYTSPIKALSNQKYRDFQAEFGDVGLMTGDVTINPTASCLVMTTEI
LRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEETIILLPDKVRYVFLSATIPNAFQ
FAEWIAKIHRQACHVVYTDFRPTPLQNYFFPAGGKGIFLIVDEKGNFKENNFQHAMNLIE
ANKGSDPADWSAKRKGKGKDKKTNKGGDAPNETADIAKIIRMIVKKKFQPVIVFNFSKRD
CEQMALKSSHMKFNAPDEELMVDKVFENALQQLSDEDKNLAQITNILPLLRKGIGVHHSG
LLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFTQVTKWDGVARRPLTSSEYI
QMAGRAGRRGLDDRGIVIMMVDDKLDPDTAKSVVVGHQDRLNSAFHLGYNMILNLLRIEA
ISPEFMLERCFFQFQNAASVPQLEKELTALQEEKDAMLLPDESTVKDYYHLREQLKELTK
DMTSVIHHPANCMEFMQPGRVIQIETPEGVNFGWGVLFDIVARKAPKHGESDYPPQEQYF
CDVLLKLSKESKSFNPAVRETSKKGGKFIMPEGQIPEQADEEGEWEVVPCLLSCVKSLSQ
LRVFLPKDVRSREEKENVGKSLLEIQRRFADGIPIMDPIENMNIRDDSFRKLLRKIEVLE
SRLLANPLHNSPLLPRLYEEFEAKTKLTEQIKEKRKAIGKAHTIAQLDELKSRKRVLRRL
GFIDEKEVVQMKARVACEISSTEGHELLLAELLFNRFFNELTPEVTAAILSVFIFDEKVE
TDALKEELAKPFREVQAQAKIIAKVSAESKLDVNEEEYVNSLKWQLMETVMAWANGRPFA
EISKMTNAYEGSLIRLFRRLEELLRQMAEAAKVMGSDELKEKFEAALGKIRRDIVSFNSL
YL
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctattcgacgtcttcgagcagcagcctcgcgctcccaagaagcgcaaggcc
ccagccgaccagagtcaagatgttgaaatgaccgatggcaccgaccatgccgcttcccag
gctgatcagtccatcaaaaccgaggatgcatcgcccgccgaagaacaccacccgcaagag
atgtcgcacggcgatatgaagcgccagaagctcgagggtgagccagaacctgccgcgcct
gtcatggccgattccttccagacggcccagtcaagagaagtcaatgccgctgcaggcttc
gctcctggcgaagagggagagtctatcgtcctgtcgcataatatccagcatcaggtcgcg
ctcccccctgacctcgactacgagtacatccctctttccgagcacaaggctcccgaagag
cccgcccgagtgtaccccttcaagctcgatcccttccaggccctgtccgtcgcctcgatc
gagcgcggcgagagtgtgctcgtttcggctcacacatctgccggcaagacggtcgtcgcc
gaatatgccattgcgcagtgtctcaagcgcaatcagagagtcatttacacgagtcccatc
aaggccctcagcaaccaaaagtaccgcgacttccaggccgagtttggtgatgttggtctc
atgaccggagatgtcaccatcaacccaaccgccagttgcttggtcatgacaaccgaaatt
ttgcgatccatgctgtaccgaggttccgaaatcatgcgcgaagttgcctgggtcgtcttc
gatgaaatccattacatgcgcgacaagactcgtggtgtggtctgggaagagaccatcatc
ctccttcccgacaaggtccgatacgtcttcctgtccgccactattcccaacgccttccag
ttcgccgaatggatcgccaagatccatcgtcaagcctgccacgttgtctataccgatttc
agaccgacaccattacaaaactacttcttccccgccggtggcaagggtatcttcctgatc
gttgacgaaaagggcaacttcaaggagaacaacttccagcatgccatgaacttgatcgag
gccaacaagggctccgatcctgccgactggagcgccaagaggaaaggaaagggcaaggac
aagaaaaccaacaagggtggcgatgccccgaacgaaacagccgacatcgccaaaatcatc
agaatgattgtcaaaaagaagtttcagccagttattgttttcaatttcagcaagcgggat
tgcgagcagatggctctcaagagttcccacatgaagttcaacgcgcccgacgaggagctc
atggtcgacaaggtctttgaaaacgcccttcagcagctgtcggacgaagacaaaaacctc
gctcaaattaccaacattcttccccttctccgcaagggcataggtgtccatcactccggt
ctcctgcctatcctcaaggagaccatcgagattttgttccaggagggtttgatcaaggtg
ttgttcgccacagaaacattctctatcggcctgaacatgcctgccaggaccgtcgttttc
acacaagtcacgaagtgggacggtgtagccaggagaccgctcacctcctccgagtacatt
cagatggctggcagagccggtcgtcgtggtctcgatgaccgcggtatcgtcattatgatg
gttgacgacaagctagatcctgatactgccaagtccgtcgttgtcggccaccaggaccgc
ctcaactcggcgttccatcttggctacaacatgatcctcaacctgttgcgtatcgaggcc
atctcccctgaatttatgctcgagaggtgtttcttccagttccagaacgccgctagcgtg
ccccagttggaaaaggaactcactgctctgcaagaggagaaggatgccatgttgctcccc
gatgagagcacggtgaaggactactatcatctccgcgagcagcttaaggagctgaccaag
gacatgacttccgtcattcaccaccctgccaactgcatggagttcatgcagcccggccgc
gtcatccagattgagactccagagggcgttaatttcggctggggagtcttgttcgacatt
gtggcccgcaaggcccccaagcatggcgaatctgactacccgccacaggagcagtacttc
tgtgatgttcttctcaagctctccaaggagagcaaatccttcaatcctgcagtcagggaa
actagcaagaagggcggcaagtttatcatgccggaaggtcagattccagaacaagcagac
gaagagggggagtgggaagttgtgccttgcctcctgtcctgcgtcaagtctctgagccag
ctccgtgtcttcctccccaaggatgttaggtcacgagaggagaaggaaaacgtcggcaag
tctctgctggaaattcagcgccgtttcgcggatgggatccccatcatggacccgatcgag
aacatgaacatcagggatgacagctttaggaagcttctcagaaagatcgaggtcttggag
tcgagactgcttgccaatccccttcacaactcgccgttattgccccggttgtacgaggag
tttgaggccaagaccaagttgacggagcagatcaaggagaagaggaaggcgattggtaag
gctcacacgattgctcagcttgacgagctcaagtcacggaagagggtgctgcggaggttg
ggatttatcgatgagaaggaggttgtgcagatgaaggcgagggtggcgtgcgagatttcg
tctacggaggggcatgagttgctgctggcggagttgcttttcaatcggttcttcaacgag
ctcaccccagaggttacggccgccatcctcagcgtgttcatctttgacgaaaaggttgag
acggacgcgctgaaggaggagttggcgaagccgtttagggaggtgcaggctcaggcgaag
attattgccaaggtcagcgccgagagcaagttggatgtgaatgaggaggagtatgtcaat
agcttgaagtggcagttgatggagacggtgatggcttgggcgaatgggaggccgtttgct
gagatcagcaaaatgactaatgcttatgaaggctccctgatccggctgtttagacggttg
gaggagctgcttaggcagatggctgaggcggccaaggtgatggggagtgatgagctcaag
gaaaagttcgaggcggcgttgggcaagattaggagggatatcgtttcttttaactctctt
tatctctag
DBGET
integrated database retrieval system
