Podospora anserina: PODANSg8201
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Entry
PODANSg8201 CDS
T01048
Name
(RefSeq) hypothetical protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
pan
Podospora anserina
Pathway
pan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PODANSg8201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pan03019
]
PODANSg8201
Enzymes [BR:
pan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
PODANSg8201
Messenger RNA biogenesis [BR:
pan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PODANSg8201
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PODANSg8201
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
6195683
NCBI-ProteinID:
XP_001911159
UniProt:
B2B5A9
LinkDB
All DBs
Position
2
AA seq
709 aa
AA seq
DB search
MYGQGPQQGHNNRLSGAPGRGQPNIPPVQYQQYNYGQQPQGHPHQHHAHHHQNLQPDPGV
HGLPAGNMGHSSYSTGAHQASSPFAAGSHPSGQTATTRGGSGQAISDSWGEQLKLYKQAQ
EAHQTMVEQHLPHYYARAKASDNKGVVYASEGTTTTEDQEVARNRPSYTTNKLVKRQDWH
NLDLSGQGVRKIARALFSYDFLVELYIASNKITVLPPDIGKLRCLKVLEASHNELHELPP
EIGMCTNLQQLILFNNHITSLPYELGFLYKLEMLGLHGNPLMNGPLKDEIMNKDTKSLIN
SLLVDAPVPPAPAPRLPITVQDDVASSLERVSVLTWNILCERYATKQMYGYTPPSALEWD
YRKQLILDEIYDRNPDIVCLQEISRNAYENEFSPSLAKHGYRGIQWSRPKVKTLPNNMVG
GVDGCATFWKTDKWIVLQKEMLDYSHLTITRPDLKQNHDVYNRAMGKDNIGTIILLESRV
TGSRLIVANTHLAWEPDLCDVKLLQIACLMENITRLGDKWTRTPPMAIDKKQAIQGILEE
GEERQELPPPGPSQEYRNNTDIPLIICGDYNSTPSSGVYDFLATGRLSHDHPEWLGRKYG
NFTRDGVEHPFSIRSAYAHLRGGPHELSFTNYTPTFREVIDYIWYSTNTLELVSLLAPPD
KQALTRIPGFPYYHFPSDHIQIMAEYVIRPRKDKRAVVEPDFGPSSRRT
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtatggtcaggggccccagcaggggcacaacaatcgcctcagtggcgctccagggcgg
ggtcagcccaatattccgccagtgcagtatcaacagtacaactacggtcaacagccacag
ggccatccacatcagcatcatgcgcatcaccatcagaatcttcagccagaccccggtgta
cacgggttaccggcggggaacatggggcattcaagctactccaccggcgcccatcaagcc
tctagcccatttgctgccgggagccatcctagcgggcaaactgccaccactagaggtggt
tctggtcaagcaatctcggacagttggggagagcagctcaaattgtacaaacaagcacag
gaggcgcatcaaaccatggttgagcagcaccttccgcactattatgcacgggccaaggca
tccgacaacaagggggtggtgtatgcttccgaaggaacgacaactacagaggaccaggaa
gtcgctagaaaccggccctcctataccacaaacaagcttgtcaaacgacaggattggcac
aacctcgacctgagcggtcaaggggtgcgcaagattgcgcgggccttgttcagttacgat
tttcttgtagagctgtacatcgcgtccaacaagattaccgtcttgcctccagatattggc
aaactaaggtgcttgaaggtgttggaagcgtctcataacgaactgcatgaactgcccccc
gaaatcggcatgtgcacaaacctccagcagcttatcttgtttaacaatcacataacaagc
cttccgtatgaactgggcttcctttacaagctggagatgctgggtctccacggcaaccca
ctcatgaacggcccgttgaaagacgaaatcatgaacaaggacacgaagagcttgatcaac
agtcttctcgttgacgctccagtcccccctgctcccgctcctcgtcttcccatcacggtg
caagatgatgtggcgtctagccttgaacgtgtcagcgttttaacgtggaatattctgtgc
gaaaggtacgcgaccaagcagatgtatggctacacaccgccctcagctcttgaatgggac
tatcgcaagcagttgatcctcgacgagatctatgaccgcaacccagacatcgtctgcctc
caagagatcagcaggaacgcctatgagaacgaattctctccctccctggccaaacacggt
tatagaggtatacagtggtcaagacccaaggtgaagacattgcccaacaacatggtaggc
ggtgttgacggctgtgctaccttctggaagaccgacaagtggattgtactgcaaaaggag
atgcttgactattcacacctcaccatcacccgcccagatctcaagcaaaaccacgacgtt
tacaacagggcgatgggcaaagataatattgggacgattatcttgctggagagccgagta
acaggttctcgcttgattgtggccaacacgcatctggcctgggaacctgatctttgcgac
gtgaagctattgcagatcgcgtgtctgatggagaacattacgaggctcggcgataagtgg
acacgaaccccgccgatggcaatcgacaaaaagcaagcgattcaagggatcctcgaagaa
ggagaggagaggcaggagcttcctccgccaggcccttcacaggagtatcgcaacaacacg
gatattcctctgatcatctgcggcgattacaactctacgcccagcagtggcgtttacgac
tttcttgccactggtcgtctttcccatgatcaccctgaatggcttggtcgaaagtacgga
aacttcacgagagacggtgttgagcaccccttcagcatccgttcggcctatgcccatctc
agaggtggacctcatgaacttagcttcaccaactacacaccaaccttccgtgaagtcatt
gactacatctggtattccaccaacacgctggagttggtgtcgttgcttgctcctccggac
aagcaggctcttacgcggattcctggcttcccatattatcacttcccatctgaccacatt
caaatcatggccgagtacgtgatccggccccgcaaggacaagagagcagtcgtggagccg
gattttggaccaagcagccggcggacttga
DBGET
integrated database retrieval system
