Planococcus antarcticus: BBH88_00240
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Entry
BBH88_00240 CDS
T04428
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pana
Planococcus antarcticus
Pathway
pana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pana00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBH88_00240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pana03019
]
BBH88_00240
03009 Ribosome biogenesis [BR:
pana03009
]
BBH88_00240
Enzymes [BR:
pana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBH88_00240
Messenger RNA biogenesis [BR:
pana03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBH88_00240
Ribosome biogenesis [BR:
pana03009
]
Prokaryotic type
rRNA helicases
BBH88_00240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
GRP
Helicase_RecD
NDK
Motif
Other DBs
NCBI-ProteinID:
ANU12100
LinkDB
All DBs
Position
545746..547212
Genome browser
AA seq
488 aa
AA seq
DB search
MGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEKIDTKDGNVQGLIIAPT
RELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALKNRPQIIVGTPGRLLDHINRRT
LKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQTLLFSATMPDAIRRIAEKFMKT
PEIVKIKSKEMTVENIEQFYVKSVEREKFDFLSRLLNVQQPELAIVFGRTKRRVDELAKA
LNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILVATDVAARGLDISGVSHVYNFDIPQ
DPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLGIVERTTKKKMEALVPPTANEAVLGQK
RVAMEQLFEMTEKNNLGDYREFATQMLEKHDAVDLIAAALKTMTKEPEDVPVSISEERPL
PSRGGGGYKGKGGSGRSGGGGGYKGNRSSSSSRPSSSRGASSGASRRREGGSGTGGGRPG
RTTRRSES
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgaagaagcaacaccaattcaagagggaacaatccgtcttggaatggaaggt
aaggacattattggacaagcgcaaacaggtactggtaaaacaactgctttcgggattcct
ttaattgaaaaaatcgacactaaagacggtaatgttcaaggattgatcatcgcaccaaca
cgcgaattggcaatccaggtttctgaagaactttacagattgggacaagataaaaacgta
cgtattctttcagtatacggcggccaagaaattagccgacaaatccgtgcacttaaaaac
cgtccgcaaattatcgttggtactccaggacgtctattagaccatatcaaccgtcgcacg
cttaaattggataatgtaaacacattaatcctcgatgaagcagacgaaatgttgaacatg
ggctttatcgaagacattcaaacaattatggcaagtgttcctgatactcgtcagacattg
ttattctcagcaactatgccggatgcaatccgtcgcattgcagagaaattcatgaaaact
cctgaaatcgttaaaatcaaatcaaaagaaatgactgttgaaaacattgagcagttctac
gtgaagtctgtagagcgcgagaaatttgatttcctttcacgtcttttgaatgttcaacag
ccggagcttgcgatcgttttcggacgtacaaaacgccgtgttgacgaattagcgaaagct
ttgaatatccgtggctatcttgctgaaggaattcacggcgacttgagccaagcaaaacgt
atgtcagttttgaagcaatttaaagcaggcaaaatcgatatcttggtagcaacagatgta
gcagctcgtggacttgatatctcaggcgtatcacacgtatacaactttgatattccacaa
gatccggaaagctatgttcaccgtatcggccgtacgggtcgtgcaggtaaaaaaggagtc
gcagtcacgtttgtaacaccacgtgaaatgggctacttgggcattgttgaacgcactacg
aagaaaaaaatggaagcactagttcctccaactgctaacgaagctgtacttggccaaaaa
cgcgttgcgatggagcaattgtttgaaatgacagagaaaaacaatcttggcgattaccgc
gaattcgcgacgcaaatgcttgaaaagcatgatgcggttgacttgattgcagcagctctt
aaaacaatgactaaagaaccggaagatgttccagtctctatttccgaagaacgtcctttg
ccatcacgcggaggcggcggatataaaggtaaaggcggaagcggacgcagtggcggaggc
gggggctataaaggcaatcgctcttcaagctcatctcgtccatcttcaagccgcggagct
agctcaggcgcaagccgccgtcgtgaaggcggaagcggaactggtggcggacgtccagga
cgtacgactcgccgtagcgaatcttaa
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