Planococcus antarcticus: BBH88_06860
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Entry
BBH88_06860 CDS
T04428
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pana
Planococcus antarcticus
Pathway
pana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pana00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBH88_06860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pana03021
]
BBH88_06860
03019 Messenger RNA biogenesis [BR:
pana03019
]
BBH88_06860
Transcription machinery [BR:
pana03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BBH88_06860
Messenger RNA biogenesis [BR:
pana03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBH88_06860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
AAA_22
ATPase_2
AAA
AAA_25
NACHT
Ribosomal_L12_N
Motif
Other DBs
NCBI-ProteinID:
ANU10039
UniProt:
A0A1C7DES1
LinkDB
All DBs
Position
complement(2975507..2976790)
Genome browser
AA seq
427 aa
AA seq
DB search
MATITISALENMTLKELYDLAKEYKLTNYSKLTKKELIFAILKTRAEQEGFFFMEGVLEI
IQSEGFGFLRPINYSPSSQDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEA
VNGEDPEVAKERVHFPGLTPLYPDRHIRLETTPAHLSTRIMDLVAPVGFGQRGLIVAPPK
AGKTMLLKEIANSITTNHPEAELIVLLIDERPEEVTDIERSVDADVVSSTFDEVPENHVK
VAELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVETGSRMDEVIYEEFKGTGNMELHLDRSLAERRIFPALDIR
RSGTRKEELLIEPKQLEKLWSIRKTFSDSHDFGERFLKKLSQTDTNEEFFEQLATEMKTH
RSNKKMI
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgataacgatctccgcattggagaatatgacgttaaaagagctttatgactta
gcaaaagaatataaattgaccaattacagtaagctgacaaaaaaagaactaatttttgcg
attttgaaaacgcgtgcagaacaagaaggcttcttctttatggaaggcgtattggaaatt
atccaatctgaaggctttggtttcttacgaccaattaattattcaccaagttcacaagac
atttacatttctgcttcccaaattcgccgttttgatttaagaaatggtgataaagtttcg
ggtaaagtgcgtccaccgaaagaaaacgaacgctatttcggtttgcttcaagttgaagcg
gtaaacggtgaagatcccgaagtagccaaagagcgggtccatttcccagggcttacgccg
ctttatccggaccgccatatccgtttggaaacgacaccagcacatttgtccacgcgcatc
atggacttagtcgcaccggttggtttcggtcagcgtggcttgatagtcgcgccgccaaaa
gctggcaaaactatgttactgaaagaaatcgccaattcgatcacgaccaatcatccggaa
gcagaattgattgtgttgctgattgatgaacgtccagaagaagtaacggatatcgagcgt
tctgtagatgcagatgttgtatcttcaacttttgatgaagtgcctgaaaatcatgttaaa
gttgccgaacttgttcttgaacgcgcaatgcgtctcgttgaacataaacgcgatgttgtc
attttgatggattccatcacacgcctagctcgagcatataatttggttattccgccaagt
ggccgtacactatcaggaggaattgatccagcggcctttcatcggccaaaacgctttttc
ggagcagcacgcaatatcgaagaaggcggcagtttgactattttagctactgctttagta
gagactggctcacgtatggacgaagtcatttacgaggaatttaaaggaacgggcaatatg
gaattgcatcttgaccgctctttggcagaacgtcgcatcttcccagcacttgacattcgc
cgttctggaacacgtaaagaagaattgctgatcgagccgaagcaacttgaaaagctgtgg
tctattcgcaaaaccttctcggattcgcatgattttggtgaacgtttcttgaaaaaactg
agccaaacagatacaaatgaagaattctttgagcaattggcaactgaaatgaagacccac
cgaagcaacaagaagatgatttaa
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